Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TQV entry

There are 2 chains in PDB entry 5TQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 225
B
 MET 1TRP 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5TQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
55 66Right-handed alpha
Helix 4
AA4
A
92 104Right-handed alpha
Helix 5
AA5
A
104 121Right-handed alpha
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
143 164Right-handed alpha
Helix 8
AA8
A
178 182Right-handed 310
Helix 9
AA9
A
189 207Right-handed alpha
Helix 10
AB1
A
207 212Right-handed alpha
Helix 11
AB2
B
12 24Right-handed alpha
Helix 12
AB3
B
34 45Right-handed alpha
Helix 13
AB4
B
55 67Right-handed alpha
Helix 14
AB5
B
92 104Right-handed alpha
Helix 15
AB6
B
104 122Right-handed alpha
Helix 16
AB7
B
130 134Right-handed 310
Helix 17
AB8
B
143 164Right-handed alpha
Helix 18
AB9
B
189 206Right-handed alpha
Helix 19
AC1
B
207 212Right-handed alpha
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There are 2 sheets in PDB entry 5TQV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
27 32parallel
Strand 3
A
3 7parallel
Strand 4
A
73 76parallel
Strand 5
A
124 128parallel
Strand 6
A
168 173parallel
Strand 7
A
214 217parallel
Strand 8
A
222 223anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
27 32parallel
Strand 3
B
3 7parallel
Strand 4
B
73 76parallel
Strand 5
B
124 128parallel
Strand 6
B
168 173parallel
Strand 7
B
214 217parallel
Strand 8
B
222 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il