Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TQW entry

There are 2 chains in PDB entry 5TQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14GLN 660
B
 PRO 14GLN 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5TQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 67Right-handed alpha
Helix 2
AA2
A
104 108Right-handed alpha
Helix 3
AA3
A
109 113Right-handed 310
Helix 4
AA4
A
117 138Right-handed alpha
Helix 5
AA5
A
146 150Right-handed 310
Helix 6
AA6
A
154 158Right-handed 310
Helix 7
AA7
A
189 194Right-handed alpha
Helix 8
AA8
A
200 216Right-handed alpha
Helix 9
AA9
A
226 235Right-handed alpha
Helix 10
AB1
A
265 280Right-handed alpha
Helix 11
AB2
A
283 287Right-handed 310
Helix 12
AB3
A
298 308Right-handed alpha
Helix 13
AB4
A
333 346Right-handed alpha
Helix 14
AB5
A
348 350Right-handed 310
Helix 15
AB6
A
404 413Right-handed alpha
Helix 16
AB7
A
419 501Right-handed alpha
Helix 17
AB8
A
505 520Right-handed alpha
Helix 18
AB9
A
528 547Right-handed alpha
Helix 19
AC1
A
550 574Right-handed alpha
Helix 20
AC2
A
583 660Right-handed alpha
Helix 21
AC3
B
51 67Right-handed alpha
Helix 22
AC4
B
104 108Right-handed alpha
Helix 23
AC5
B
109 113Right-handed 310
Helix 24
AC6
B
117 138Right-handed alpha
Helix 25
AC7
B
146 150Right-handed 310
Helix 26
AC8
B
154 158Right-handed 310
Helix 27
AC9
B
189 194Right-handed alpha
Helix 28
AD1
B
200 216Right-handed alpha
Helix 29
AD2
B
226 235Right-handed alpha
Helix 30
AD3
B
265 280Right-handed alpha
Helix 31
AD4
B
283 287Right-handed 310
Helix 32
AD5
B
298 308Right-handed alpha
Helix 33
AD6
B
333 346Right-handed alpha
Helix 34
AD7
B
348 350Right-handed 310
Helix 35
AD8
B
404 413Right-handed alpha
Helix 36
AD9
B
419 501Right-handed alpha
Helix 37
AE1
B
505 520Right-handed alpha
Helix 38
AE2
B
528 547Right-handed alpha
Helix 39
AE3
B
550 574Right-handed alpha
Helix 40
AE4
B
583 660Right-handed alpha
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There are 10 sheets in PDB entry 5TQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
28 34anti-parallel
Strand 3
A
22 23anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
28 34anti-parallel
Strand 3
A
40 43anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
160 161anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
252 255anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
312 317anti-parallel
Strand 3
A
384 388parallel
Strand 4
A
352 355anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
28 34anti-parallel
Strand 3
B
22 23anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
28 34anti-parallel
Strand 3
B
40 43anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
160 161anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 246first strand
Strand 2
B
252 255anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 327first strand
Strand 2
B
312 317anti-parallel
Strand 3
B
384 388parallel
Strand 4
B
352 355anti-parallel
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