Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TQX entry

There are 2 chains in PDB entry 5TQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14GLN 660
B
 PRO 14GLN 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 5TQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 67Right-handed alpha
Helix 2
AA2
A
105 109Right-handed 310
Helix 3
AA3
A
117 138Right-handed alpha
Helix 4
AA4
A
146 150Right-handed 310
Helix 5
AA5
A
189 195Right-handed alpha
Helix 6
AA6
A
200 216Right-handed alpha
Helix 7
AA7
A
226 235Right-handed alpha
Helix 8
AA8
A
265 280Right-handed alpha
Helix 9
AA9
A
283 287Right-handed 310
Helix 10
AB1
A
298 309Right-handed alpha
Helix 11
AB2
A
333 345Right-handed alpha
Helix 12
AB3
A
404 413Right-handed alpha
Helix 13
AB4
A
419 498Right-handed alpha
Helix 14
AB5
A
504 520Right-handed alpha
Helix 15
AB6
A
526 545Right-handed alpha
Helix 16
AB7
A
555 571Right-handed alpha
Helix 17
AB8
A
583 660Right-handed alpha
Helix 18
AB9
B
51 67Right-handed alpha
Helix 19
AC1
B
105 109Right-handed 310
Helix 20
AC2
B
117 138Right-handed alpha
Helix 21
AC3
B
146 150Right-handed 310
Helix 22
AC4
B
189 195Right-handed alpha
Helix 23
AC5
B
200 216Right-handed alpha
Helix 24
AC6
B
226 235Right-handed alpha
Helix 25
AC7
B
265 280Right-handed alpha
Helix 26
AC8
B
283 287Right-handed 310
Helix 27
AC9
B
298 309Right-handed alpha
Helix 28
AD1
B
333 345Right-handed alpha
Helix 29
AD2
B
404 413Right-handed alpha
Helix 30
AD3
B
419 498Right-handed alpha
Helix 31
AD4
B
504 520Right-handed alpha
Helix 32
AD5
B
526 545Right-handed alpha
Helix 33
AD6
B
555 571Right-handed alpha
Helix 34
AD7
B
583 660Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5TQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
42 44anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
158 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
252 255anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 328first strand
Strand 2
A
311 317anti-parallel
Strand 3
A
384 388parallel
Strand 4
A
352 355anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
42 44anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
158 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 246first strand
Strand 2
B
252 255anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 328first strand
Strand 2
B
311 317anti-parallel
Strand 3
B
384 388parallel
Strand 4
B
352 355anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il