Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TQY entry

There are 2 chains in PDB entry 5TQY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 14	GLN 660
B	PRO 14	GLN 660

There are 36 helices in PDB entry 5TQY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	104	108	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	117	138	Right-handed alpha
Helix 5	AA5	A	146	148	Right-handed 310
Helix 6	AA6	A	189	194	Right-handed alpha
Helix 7	AA7	A	199	217	Right-handed alpha
Helix 8	AA8	A	226	235	Right-handed alpha
Helix 9	AA9	A	265	280	Right-handed alpha
Helix 10	AB1	A	299	308	Right-handed alpha
Helix 11	AB2	A	333	346	Right-handed alpha
Helix 12	AB3	A	404	413	Right-handed alpha
Helix 13	AB4	A	419	500	Right-handed alpha
Helix 14	AB5	A	504	521	Right-handed alpha
Helix 15	AB6	A	525	546	Right-handed alpha
Helix 16	AB7	A	550	573	Right-handed alpha
Helix 17	AB8	A	575	579	Right-handed 310
Helix 18	AB9	A	583	660	Right-handed alpha
Helix 19	AC1	B	51	67	Right-handed alpha
Helix 20	AC2	B	104	108	Right-handed alpha
Helix 21	AC3	B	111	115	Right-handed 310
Helix 22	AC4	B	117	138	Right-handed alpha
Helix 23	AC5	B	146	148	Right-handed 310
Helix 24	AC6	B	189	194	Right-handed alpha
Helix 25	AC7	B	199	217	Right-handed alpha
Helix 26	AC8	B	226	235	Right-handed alpha
Helix 27	AC9	B	265	280	Right-handed alpha
Helix 28	AD1	B	299	308	Right-handed alpha
Helix 29	AD2	B	333	346	Right-handed alpha
Helix 30	AD3	B	404	413	Right-handed alpha
Helix 31	AD4	B	419	500	Right-handed alpha
Helix 32	AD5	B	504	521	Right-handed alpha
Helix 33	AD6	B	525	546	Right-handed alpha
Helix 34	AD7	B	550	573	Right-handed alpha
Helix 35	AD8	B	575	579	Right-handed 310
Helix 36	AD9	B	583	660	Right-handed alpha

There are 10 sheets in PDB entry 5TQY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	22	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	41	44	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	155	first strand
Strand 2	A	158	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	297	298	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	327	first strand
Strand 2	A	312	317	anti-parallel
Strand 3	A	384	388	parallel
Strand 4	A	352	355	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	22	first strand
Strand 2	B	29	33	anti-parallel
Strand 3	B	41	44	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	158	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	297	298	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	327	first strand
Strand 2	B	312	317	anti-parallel
Strand 3	B	384	388	parallel
Strand 4	B	352	355	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TQY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQY