Analysis of interatomic Contacts of Structural Units in PDB entry:
5TR1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TR1 entry

There are 6 chains in PDB entry 5TR1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 36	PRO 683
H	ASP 1	VAL 111
L	ASP 1	LYS 107
B	LEU 36	PRO 683
I	ASP 1	VAL 111
M	ASP 1	LYS 107

There are 64 helices in PDB entry 5TR1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	85	Right-handed alpha
Helix 2	AA2	A	88	115	Right-handed alpha
Helix 3	AA3	A	122	132	Right-handed alpha
Helix 4	AA4	A	140	142	Right-handed 310
Helix 5	AA5	A	143	158	Right-handed alpha
Helix 6	AA6	A	165	185	Right-handed alpha
Helix 7	AA7	A	194	214	Right-handed alpha
Helix 8	AA8	A	215	228	Right-handed alpha
Helix 9	AA9	A	232	253	Right-handed alpha
Helix 10	AB1	A	254	256	Right-handed 310
Helix 11	AB2	A	278	313	Right-handed alpha
Helix 12	AB3	A	313	323	Right-handed alpha
Helix 13	AB4	A	323	340	Right-handed alpha
Helix 14	AB5	A	344	349	Right-handed alpha
Helix 15	AB6	A	353	362	Right-handed alpha
Helix 16	AB7	A	366	374	Right-handed alpha
Helix 17	AB8	A	386	392	Right-handed 310
Helix 18	AB9	A	397	419	Right-handed alpha
Helix 19	AC1	A	426	448	Right-handed alpha
Helix 20	AC2	A	462	480	Right-handed alpha
Helix 21	AC3	A	482	493	Right-handed alpha
Helix 22	AC4	A	497	516	Right-handed alpha
Helix 23	AC5	A	518	528	Right-handed alpha
Helix 24	AC6	A	546	551	Right-handed alpha
Helix 25	AC7	A	563	575	Right-handed alpha
Helix 26	AC8	A	596	605	Right-handed alpha
Helix 27	AC9	A	619	625	Right-handed alpha
Helix 28	AD1	A	640	652	Right-handed alpha
Helix 29	AD2	A	670	682	Right-handed alpha
Helix 30	AD3	H	62	65	Right-handed 310
Helix 31	AD4	H	87	91	Right-handed 310
Helix 32	AD5	L	79	83	Right-handed 310
Helix 33	AD6	B	37	85	Right-handed alpha
Helix 34	AD7	B	88	115	Right-handed alpha
Helix 35	AD8	B	122	132	Right-handed alpha
Helix 36	AD9	B	140	142	Right-handed 310
Helix 37	AE1	B	143	158	Right-handed alpha
Helix 38	AE2	B	165	185	Right-handed alpha
Helix 39	AE3	B	194	214	Right-handed alpha
Helix 40	AE4	B	215	228	Right-handed alpha
Helix 41	AE5	B	232	253	Right-handed alpha
Helix 42	AE6	B	254	256	Right-handed 310
Helix 43	AE7	B	278	313	Right-handed alpha
Helix 44	AE8	B	313	323	Right-handed alpha
Helix 45	AE9	B	323	340	Right-handed alpha
Helix 46	AF1	B	344	349	Right-handed alpha
Helix 47	AF2	B	353	362	Right-handed alpha
Helix 48	AF3	B	366	374	Right-handed alpha
Helix 49	AF4	B	386	392	Right-handed 310
Helix 50	AF5	B	397	419	Right-handed alpha
Helix 51	AF6	B	426	448	Right-handed alpha
Helix 52	AF7	B	462	480	Right-handed alpha
Helix 53	AF8	B	482	493	Right-handed alpha
Helix 54	AF9	B	497	516	Right-handed alpha
Helix 55	AG1	B	518	528	Right-handed alpha
Helix 56	AG2	B	546	551	Right-handed alpha
Helix 57	AG3	B	563	575	Right-handed alpha
Helix 58	AG4	B	596	605	Right-handed alpha
Helix 59	AG5	B	619	625	Right-handed alpha
Helix 60	AG6	B	640	652	Right-handed alpha
Helix 61	AG7	B	670	682	Right-handed alpha
Helix 62	AG8	I	62	65	Right-handed 310
Helix 63	AG9	I	87	91	Right-handed 310
Helix 64	AH1	M	79	83	Right-handed 310

There are 15 sheets in PDB entry 5TR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	559	first strand
Strand 2	A	578	582	parallel
Strand 3	A	590	595	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	635	first strand
Strand 2	B	633	635	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	660	first strand
Strand 2	A	663	669	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	78	81	anti-parallel
Strand 4	H	70	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	35	40	anti-parallel
Strand 4	H	92	98	anti-parallel
Strand 5	H	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	106	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	50	anti-parallel
Strand 3	L	33	37	anti-parallel
Strand 4	L	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	559	first strand
Strand 2	B	578	582	parallel
Strand 3	B	590	595	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	655	660	first strand
Strand 2	B	663	669	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	21	25	anti-parallel
Strand 3	I	78	81	anti-parallel
Strand 4	I	70	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	35	40	anti-parallel
Strand 4	I	92	98	anti-parallel
Strand 5	I	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	103	106	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	45	50	anti-parallel
Strand 3	M	33	37	anti-parallel
Strand 4	M	88	90	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TR1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TR1