Analysis of interatomic Contacts of Structural Units in PDB entry:
5TR3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TR3 entry

There are 2 chains in PDB entry 5TR3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 474
B
 MET 1ASN 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 5TR3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
46 52Right-handed alpha
Helix 3
AA3
A
53 73Right-handed alpha
Helix 4
AA4
A
74 77Right-handed 310
Helix 5
AA5
A
87 114Right-handed alpha
Helix 6
AA6
A
170 175Right-handed alpha
Helix 7
AA7
A
190 203Right-handed alpha
Helix 8
AA8
A
221 235Right-handed alpha
Helix 9
AA9
A
318 321Right-handed 310
Helix 10
AB1
A
326 342Right-handed alpha
Helix 11
AB2
A
349 353Right-handed 310
Helix 12
AB3
A
369 376Right-handed alpha
Helix 13
AB4
A
390 397Right-handed alpha
Helix 14
AB5
A
423 437Right-handed alpha
Helix 15
AB6
A
440 446Right-handed alpha
Helix 16
AB7
A
455 466Right-handed alpha
Helix 17
AB8
B
15 26Right-handed alpha
Helix 18
AB9
B
46 52Right-handed alpha
Helix 19
AC1
B
53 73Right-handed alpha
Helix 20
AC2
B
74 77Right-handed 310
Helix 21
AC3
B
87 114Right-handed alpha
Helix 22
AC4
B
170 175Right-handed alpha
Helix 23
AC5
B
190 203Right-handed alpha
Helix 24
AC6
B
221 235Right-handed alpha
Helix 25
AC7
B
318 321Right-handed 310
Helix 26
AC8
B
326 342Right-handed alpha
Helix 27
AC9
B
369 376Right-handed alpha
Helix 28
AD1
B
390 397Right-handed alpha
Helix 29
AD2
B
423 437Right-handed alpha
Helix 30
AD3
B
440 446Right-handed alpha
Helix 31
AD4
B
455 466Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 5TR3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
30 34parallel
Strand 3
A
4 10parallel
Strand 4
A
139 149parallel
Strand 5
A
129 133anti-parallel
Strand 6
A
121 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
30 34parallel
Strand 3
A
4 10parallel
Strand 4
A
139 149parallel
Strand 5
A
314 316parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
B
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
B
79 80anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
279 281anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
272 275parallel
Strand 3
A
183 187parallel
Strand 4
A
206 210parallel
Strand 5
A
237 240parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 251first strand
Strand 2
A
254 261anti-parallel
Strand 3
A
264 270anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
414 420anti-parallel
Strand 4
A
402 408anti-parallel
Strand 5
A
380 386anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
30 34parallel
Strand 3
B
4 10parallel
Strand 4
B
139 149parallel
Strand 5
B
129 133anti-parallel
Strand 6
B
121 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
30 34parallel
Strand 3
B
4 10parallel
Strand 4
B
139 149parallel
Strand 5
B
314 316parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
279 281anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
272 275parallel
Strand 3
B
183 187parallel
Strand 4
B
206 210parallel
Strand 5
B
237 240parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 251first strand
Strand 2
B
254 261anti-parallel
Strand 3
B
264 270anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
414 421anti-parallel
Strand 4
B
402 408anti-parallel
Strand 5
B
380 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il