Analysis of interatomic Contacts of Structural Units in PDB entry:
5TR4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TR4 entry

There are 4 chains in PDB entry 5TR4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 14	LEU 1024
B	MET 1	GLY 76
C	ILE 14	LEU 1024
D	MET 1	GLY 76

There are 92 helices in PDB entry 5TR4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	27	Right-handed alpha
Helix 2	AA2	A	27	35	Right-handed alpha
Helix 3	AA3	A	45	59	Right-handed alpha
Helix 4	AA4	A	72	78	Right-handed 310
Helix 5	AA5	A	83	87	Right-handed 310
Helix 6	AA6	A	90	101	Right-handed alpha
Helix 7	AA7	A	116	123	Right-handed 310
Helix 8	AA8	A	133	148	Right-handed alpha
Helix 9	AA9	A	219	224	Right-handed 310
Helix 10	AB1	A	243	247	Right-handed 310
Helix 11	AB2	A	268	275	Right-handed alpha
Helix 12	AB3	A	282	286	Right-handed 310
Helix 13	AB4	A	287	306	Right-handed alpha
Helix 14	AB5	A	315	333	Right-handed alpha
Helix 15	AB6	A	344	355	Right-handed alpha
Helix 16	AB7	A	359	380	Right-handed alpha
Helix 17	AB8	A	394	397	Right-handed 310
Helix 18	AB9	A	417	425	Right-handed alpha
Helix 19	AC1	A	425	434	Right-handed alpha
Helix 20	AC2	A	443	457	Right-handed alpha
Helix 21	AC3	A	475	481	Right-handed 310
Helix 22	AC4	A	486	490	Right-handed 310
Helix 23	AC5	A	493	506	Right-handed alpha
Helix 24	AC6	A	507	510	Right-handed 310
Helix 25	AC7	A	521	525	Right-handed 310
Helix 26	AC8	A	529	536	Right-handed alpha
Helix 27	AC9	A	545	560	Right-handed alpha
Helix 28	AD1	A	585	589	Right-handed 310
Helix 29	AD2	A	598	604	Right-handed alpha
Helix 30	AD3	A	608	625	Right-handed alpha
Helix 31	AD4	A	625	637	Right-handed alpha
Helix 32	AD5	A	653	663	Right-handed alpha
Helix 33	AD6	A	668	685	Right-handed alpha
Helix 34	AD7	A	685	695	Right-handed alpha
Helix 35	AD8	A	724	742	Right-handed alpha
Helix 36	AD9	A	754	763	Right-handed alpha
Helix 37	AE1	A	829	845	Right-handed alpha
Helix 38	AE2	A	851	861	Right-handed alpha
Helix 39	AE3	A	866	886	Right-handed alpha
Helix 40	AE4	A	890	894	Right-handed 310
Helix 41	AE5	A	938	949	Right-handed alpha
Helix 42	AE6	A	970	976	Right-handed alpha
Helix 43	AE7	A	981	990	Right-handed alpha
Helix 44	AE8	B	22	35	Right-handed alpha
Helix 45	AE9	B	37	41	Right-handed 310
Helix 46	AF1	B	56	60	Right-handed 310
Helix 47	AF2	C	15	27	Right-handed alpha
Helix 48	AF3	C	27	35	Right-handed alpha
Helix 49	AF4	C	45	59	Right-handed alpha
Helix 50	AF5	C	72	78	Right-handed 310
Helix 51	AF6	C	83	87	Right-handed 310
Helix 52	AF7	C	90	101	Right-handed alpha
Helix 53	AF8	C	116	123	Right-handed 310
Helix 54	AF9	C	133	147	Right-handed alpha
Helix 55	AG1	C	219	224	Right-handed 310
Helix 56	AG2	C	243	247	Right-handed 310
Helix 57	AG3	C	268	275	Right-handed alpha
Helix 58	AG4	C	282	286	Right-handed 310
Helix 59	AG5	C	287	306	Right-handed alpha
Helix 60	AG6	C	315	333	Right-handed alpha
Helix 61	AG7	C	344	355	Right-handed alpha
Helix 62	AG8	C	359	380	Right-handed alpha
Helix 63	AG9	C	394	397	Right-handed 310
Helix 64	AH1	C	417	425	Right-handed alpha
Helix 65	AH2	C	425	434	Right-handed alpha
Helix 66	AH3	C	443	457	Right-handed alpha
Helix 67	AH4	C	475	479	Right-handed 310
Helix 68	AH5	C	486	490	Right-handed 310
Helix 69	AH6	C	493	506	Right-handed alpha
Helix 70	AH7	C	507	510	Right-handed 310
Helix 71	AH8	C	521	525	Right-handed 310
Helix 72	AH9	C	529	536	Right-handed alpha
Helix 73	AI1	C	545	559	Right-handed alpha
Helix 74	AI2	C	585	589	Right-handed 310
Helix 75	AI3	C	598	604	Right-handed alpha
Helix 76	AI4	C	608	625	Right-handed alpha
Helix 77	AI5	C	625	634	Right-handed alpha
Helix 78	AI6	C	652	664	Right-handed alpha
Helix 79	AI7	C	668	685	Right-handed alpha
Helix 80	AI8	C	685	695	Right-handed alpha
Helix 81	AI9	C	724	742	Right-handed alpha
Helix 82	AJ1	C	754	763	Right-handed alpha
Helix 83	AJ2	C	829	845	Right-handed alpha
Helix 84	AJ3	C	851	860	Right-handed alpha
Helix 85	AJ4	C	866	886	Right-handed alpha
Helix 86	AJ5	C	890	894	Right-handed 310
Helix 87	AJ6	C	938	950	Right-handed alpha
Helix 88	AJ7	C	970	979	Right-handed alpha
Helix 89	AJ8	C	981	990	Right-handed alpha
Helix 90	AJ9	D	22	35	Right-handed alpha
Helix 91	AK1	D	37	41	Right-handed 310
Helix 92	AK2	D	56	60	Right-handed 310

There are 15 sheets in PDB entry 5TR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	62	66	parallel
Strand 3	A	38	42	parallel
Strand 4	A	125	128	parallel
Strand 5	A	150	157	parallel
Strand 6	A	160	166	anti-parallel
Strand 7	A	388	392	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	262	264	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	210	214	anti-parallel
Strand 3	A	254	258	anti-parallel
Strand 4	A	183	189	anti-parallel
Strand 5	A	194	197	anti-parallel
Strand 6	A	237	239	anti-parallel
Strand 7	A	231	232	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	516	first strand
Strand 2	A	465	469	parallel
Strand 3	A	436	440	parallel
Strand 4	A	538	541	parallel
Strand 5	A	563	569	parallel
Strand 6	A	572	578	anti-parallel
Strand 7	A	896	900	anti-parallel
Strand 8	A	905	909	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	916	919	first strand
Strand 2	A	922	925	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	931	934	first strand
Strand 2	A	1020	1023	parallel
Strand 3	A	1000	1008	anti-parallel
Strand 4	A	953	959	anti-parallel
Strand 5	A	962	966	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	931	934	first strand
Strand 2	A	1020	1023	parallel
Strand 3	A	1000	1008	anti-parallel
Strand 4	A	1014	1015	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	66	70	parallel
Strand 4	B	42	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	62	66	parallel
Strand 3	C	38	42	parallel
Strand 4	C	125	128	parallel
Strand 5	C	150	157	parallel
Strand 6	C	160	166	anti-parallel
Strand 7	C	388	392	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	262	264	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	229	first strand
Strand 2	C	210	214	anti-parallel
Strand 3	C	254	258	anti-parallel
Strand 4	C	183	189	anti-parallel
Strand 5	C	194	197	anti-parallel
Strand 6	C	237	239	anti-parallel
Strand 7	C	231	232	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	516	first strand
Strand 2	C	465	469	parallel
Strand 3	C	436	440	parallel
Strand 4	C	538	541	parallel
Strand 5	C	563	569	parallel
Strand 6	C	572	578	anti-parallel
Strand 7	C	896	900	anti-parallel
Strand 8	C	905	909	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	916	919	first strand
Strand 2	C	922	925	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	931	934	first strand
Strand 2	C	1020	1023	parallel
Strand 3	C	1000	1008	anti-parallel
Strand 4	C	953	959	anti-parallel
Strand 5	C	962	966	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	7	anti-parallel
Strand 3	D	66	70	parallel
Strand 4	D	42	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TR4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TR4