Analysis of interatomic Contacts of Structural Units in PDB entry:
5TR7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TR7 entry

There are 3 chains in PDB entry 5TR7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33GLU 283
B
 ALA 34PHE 282
C
 ASP 33GLU 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5TR7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 66Right-handed 310
Helix 2
AA2
A
67 82Right-handed alpha
Helix 3
AA3
A
94 102Right-handed 310
Helix 4
AA4
A
118 127Right-handed alpha
Helix 5
AA5
A
130 143Right-handed alpha
Helix 6
AA6
A
144 159Right-handed alpha
Helix 7
AA7
A
180 195Right-handed alpha
Helix 8
AA8
A
195 200Right-handed alpha
Helix 9
AA9
A
201 204Right-handed 310
Helix 10
AB1
A
218 223Right-handed 310
Helix 11
AB2
A
263 283Right-handed alpha
Helix 12
AB3
B
64 66Right-handed 310
Helix 13
AB4
B
67 82Right-handed alpha
Helix 14
AB5
B
98 102Right-handed 310
Helix 15
AB6
B
118 127Right-handed alpha
Helix 16
AB7
B
130 143Right-handed alpha
Helix 17
AB8
B
144 159Right-handed alpha
Helix 18
AB9
B
180 195Right-handed alpha
Helix 19
AC1
B
195 200Right-handed alpha
Helix 20
AC2
B
201 204Right-handed 310
Helix 21
AC3
B
218 223Right-handed 310
Helix 22
AC4
B
263 282Right-handed alpha
Helix 23
AC5
C
64 66Right-handed 310
Helix 24
AC6
C
67 82Right-handed alpha
Helix 25
AC7
C
98 102Right-handed 310
Helix 26
AC8
C
118 127Right-handed alpha
Helix 27
AC9
C
130 143Right-handed alpha
Helix 28
AD1
C
144 159Right-handed alpha
Helix 29
AD2
C
180 195Right-handed alpha
Helix 30
AD3
C
195 200Right-handed alpha
Helix 31
AD4
C
201 204Right-handed 310
Helix 32
AD5
C
218 223Right-handed 310
Helix 33
AD6
C
263 282Right-handed alpha
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There are 9 sheets in PDB entry 5TR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
41 46anti-parallel
Strand 3
A
252 261anti-parallel
Strand 4
A
240 249anti-parallel
Strand 5
A
227 236anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
115 117anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
212 215anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
41 46anti-parallel
Strand 3
B
252 261anti-parallel
Strand 4
B
240 249anti-parallel
Strand 5
B
227 236anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
115 117anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
212 215anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
41 46anti-parallel
Strand 3
C
252 261anti-parallel
Strand 4
C
240 249anti-parallel
Strand 5
C
227 236anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
116 117anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 209first strand
Strand 2
C
212 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il