Analysis of interatomic Contacts of Structural Units in PDB entry:
5TR9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TR9 entry

There are 2 chains in PDB entry 5TR9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14PHE 267
B
 GLU 14PHE 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5TR9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 96Right-handed alpha
Helix 2
AA2
A
113 117Right-handed 310
Helix 3
AA3
A
132 140Right-handed alpha
Helix 4
AA4
A
141 148Right-handed alpha
Helix 5
AA5
A
159 163Right-handed 310
Helix 6
AA6
A
165 174Right-handed alpha
Helix 7
AA7
A
204 211Right-handed alpha
Helix 8
AA8
A
212 219Right-handed alpha
Helix 9
AA9
A
234 248Right-handed alpha
Helix 10
AB1
B
87 94Right-handed alpha
Helix 11
AB2
B
113 117Right-handed 310
Helix 12
AB3
B
132 140Right-handed alpha
Helix 13
AB4
B
141 148Right-handed alpha
Helix 14
AB5
B
159 163Right-handed 310
Helix 15
AB6
B
165 173Right-handed alpha
Helix 16
AB7
B
204 211Right-handed alpha
Helix 17
AB8
B
212 219Right-handed alpha
Helix 18
AB9
B
234 248Right-handed alpha
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There are 4 sheets in PDB entry 5TR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 67first strand
Strand 2
A
50 57anti-parallel
Strand 3
A
101 105anti-parallel
Strand 4
A
17 29anti-parallel
Strand 5
A
32 38anti-parallel
Strand 6
A
76 82anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
185 191parallel
Strand 3
A
150 157parallel
Strand 4
A
122 128parallel
Strand 5
A
227 233parallel
Strand 6
A
261 265parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 67first strand
Strand 2
B
50 57anti-parallel
Strand 3
B
101 105anti-parallel
Strand 4
B
17 29anti-parallel
Strand 5
B
32 38anti-parallel
Strand 6
B
76 82anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
185 191parallel
Strand 3
B
151 157parallel
Strand 4
B
122 128parallel
Strand 5
B
227 233parallel
Strand 6
B
261 265parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il