Analysis of interatomic Contacts of Structural Units in PDB entry:
5TRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TRC entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5TRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1036VAL 1156
A
 VAL 1158PRO 1495
B
 SER 1036VAL 1156
B
 VAL 1158PRO 1495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5TRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1036 1053Right-handed alpha
Helix 2
AA2
A
1068 1077Right-handed alpha
Helix 3
AA3
A
1082 1087Right-handed alpha
Helix 4
AA4
A
1088 1091Right-handed 310
Helix 5
AA5
A
1097 1110Right-handed alpha
Helix 6
AA6
A
1182 1184Right-handed 310
Helix 7
AA7
A
1185 1195Right-handed alpha
Helix 8
AA8
A
1234 1256Right-handed alpha
Helix 9
AA9
A
1287 1290Right-handed 310
Helix 10
AB1
A
1293 1301Right-handed 310
Helix 11
AB2
A
1302 1306Right-handed 310
Helix 12
AB3
A
1352 1373Right-handed alpha
Helix 13
AB4
A
1396 1404Right-handed alpha
Helix 14
AB5
A
1408 1410Right-handed 310
Helix 15
AB6
A
1411 1419Right-handed alpha
Helix 16
AB7
A
1490 1494Right-handed 310
Helix 17
AB8
B
1037 1050Right-handed alpha
Helix 18
AB9
B
1069 1077Right-handed alpha
Helix 19
AC1
B
1082 1087Right-handed alpha
Helix 20
AC2
B
1088 1092Right-handed 310
Helix 21
AC3
B
1094 1110Right-handed alpha
Helix 22
AC4
B
1184 1195Right-handed alpha
Helix 23
AC5
B
1234 1248Right-handed alpha
Helix 24
AC6
B
1249 1256Right-handed alpha
Helix 25
AC7
B
1287 1290Right-handed 310
Helix 26
AC8
B
1293 1300Right-handed 310
Helix 27
AC9
B
1301 1306Right-handed 310
Helix 28
AD1
B
1352 1375Right-handed alpha
Helix 29
AD2
B
1396 1405Right-handed alpha
Helix 30
AD3
B
1407 1410Right-handed 310
Helix 31
AD4
B
1411 1419Right-handed alpha
Helix 32
AD5
B
1490 1494Right-handed 310
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There are 4 sheets in PDB entry 5TRC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1122first strand
Strand 2
A
1127 1134anti-parallel
Strand 3
A
1173 1178anti-parallel
Strand 4
A
1220 1225parallel
Strand 5
A
1258 1265parallel
Strand 6
A
1274 1279anti-parallel
Strand 7
A
1284 1285anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1308 1313first strand
Strand 2
A
1320 1327anti-parallel
Strand 3
A
1334 1342anti-parallel
Strand 4
A
1383 1389parallel
Strand 5
A
1420 1430parallel
Strand 6
A
1437 1445anti-parallel
Strand 7
A
1453 1461anti-parallel
Strand 8
A
1467 1471anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1115 1121first strand
Strand 2
B
1128 1133anti-parallel
Strand 3
B
1174 1182anti-parallel
Strand 4
B
1220 1228parallel
Strand 5
B
1258 1265parallel
Strand 6
B
1274 1279anti-parallel
Strand 7
B
1284 1285anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1308 1313first strand
Strand 2
B
1320 1327anti-parallel
Strand 3
B
1334 1342anti-parallel
Strand 4
B
1383 1393parallel
Strand 5
B
1420 1429parallel
Strand 6
B
1438 1445anti-parallel
Strand 7
B
1453 1460anti-parallel
Strand 8
B
1468 1471anti-parallel
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