Analysis of interatomic Contacts of Structural Units in PDB entry:
5TRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TRD entry

There are 4 chains in PDB entry 5TRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5HIS 223
B
 TYR 7GLU 221
G
 A 1 A 19
H
 T 1 A 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5TRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 19Right-handed alpha
Helix 2
AA2
A
27 36Right-handed alpha
Helix 3
AA3
A
38 52Right-handed alpha
Helix 4
AA4
A
69 87Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
112 124Right-handed alpha
Helix 7
AA7
A
140 150Right-handed alpha
Helix 8
AA8
A
201 206Right-handed alpha
Helix 9
AA9
B
8 19Right-handed alpha
Helix 10
AB1
B
27 36Right-handed alpha
Helix 11
AB2
B
38 52Right-handed alpha
Helix 12
AB3
B
69 87Right-handed alpha
Helix 13
AB4
B
104 111Right-handed alpha
Helix 14
AB5
B
112 124Right-handed alpha
Helix 15
AB6
B
140 150Right-handed alpha
Helix 16
AB7
B
201 206Right-handed alpha
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There are 6 sheets in PDB entry 5TRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
63 68anti-parallel
Strand 3
A
55 60anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
168 175anti-parallel
Strand 3
A
213 218anti-parallel
Strand 4
A
93 100anti-parallel
Strand 5
A
132 136anti-parallel
Strand 6
A
193 197anti-parallel
Strand 7
A
178 185anti-parallel
Strand 8
A
168 175anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
164 165anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
63 68anti-parallel
Strand 3
B
55 60anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
168 175anti-parallel
Strand 3
B
213 218anti-parallel
Strand 4
B
93 100anti-parallel
Strand 5
B
132 136anti-parallel
Strand 6
B
193 197anti-parallel
Strand 7
B
178 185anti-parallel
Strand 8
B
168 175anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
164 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il