Analysis of interatomic Contacts of Structural Units in PDB entry:
5TRM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TRM entry

There are 24 chains in PDB entry 5TRM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 498	THR 662
W	ILE 499	THR 662
V	ILE 499	THR 662
U	GLY 497	THR 662
T	ILE 498	THR 662
S	ILE 499	THR 662
R	GLY 497	THR 662
Q	ILE 499	ARG 658
P	ILE 499	THR 662
O	ILE 499	THR 662
N	GLY 497	THR 662
M	ILE 499	THR 662
L	ILE 499	THR 662
K	ILE 498	THR 662
J	GLY 497	THR 662
F	GLY 497	THR 662
C	ILE 498	THR 662
B	ILE 498	THR 662
D	ILE 498	THR 662
E	GLY 497	THR 662
G	GLY 497	THR 662
H	GLY 497	THR 662
I	ILE 498	THR 662
X	ILE 499	THR 662

There are141 helices in PDB entry 5TRM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	513	531	Right-handed alpha
Helix 2	AA2	A	535	544	Right-handed alpha
Helix 3	AA3	A	583	586	Right-handed 310
Helix 4	AA4	A	589	604	Right-handed alpha
Helix 5	AA5	A	618	625	Right-handed alpha
Helix 6	AA6	A	634	639	Right-handed alpha
Helix 7	AA7	W	514	531	Right-handed alpha
Helix 8	AA8	W	535	544	Right-handed alpha
Helix 9	AA9	W	589	604	Right-handed alpha
Helix 10	AB1	W	619	625	Right-handed alpha
Helix 11	AB2	W	634	639	Right-handed alpha
Helix 12	AB3	V	513	530	Right-handed alpha
Helix 13	AB4	V	535	544	Right-handed alpha
Helix 14	AB5	V	589	605	Right-handed alpha
Helix 15	AB6	V	618	625	Right-handed alpha
Helix 16	AB7	V	634	639	Right-handed alpha
Helix 17	AB8	U	514	531	Right-handed alpha
Helix 18	AB9	U	535	544	Right-handed alpha
Helix 19	AC1	U	583	586	Right-handed 310
Helix 20	AC2	U	589	605	Right-handed alpha
Helix 21	AC3	U	615	625	Right-handed alpha
Helix 22	AC4	U	634	639	Right-handed alpha
Helix 23	AC5	T	513	531	Right-handed alpha
Helix 24	AC6	T	535	544	Right-handed alpha
Helix 25	AC7	T	583	586	Right-handed 310
Helix 26	AC8	T	589	604	Right-handed alpha
Helix 27	AC9	T	615	625	Right-handed alpha
Helix 28	AD1	T	634	639	Right-handed alpha
Helix 29	AD2	S	513	531	Right-handed alpha
Helix 30	AD3	S	535	544	Right-handed alpha
Helix 31	AD4	S	583	586	Right-handed 310
Helix 32	AD5	S	589	604	Right-handed alpha
Helix 33	AD6	S	618	625	Right-handed alpha
Helix 34	AD7	S	634	639	Right-handed alpha
Helix 35	AD8	R	514	531	Right-handed alpha
Helix 36	AD9	R	535	544	Right-handed alpha
Helix 37	AE1	R	583	586	Right-handed 310
Helix 38	AE2	R	589	604	Right-handed alpha
Helix 39	AE3	R	615	625	Right-handed alpha
Helix 40	AE4	R	634	639	Right-handed alpha
Helix 41	AE5	Q	514	531	Right-handed alpha
Helix 42	AE6	Q	535	544	Right-handed alpha
Helix 43	AE7	Q	569	572	Right-handed 310
Helix 44	AE8	Q	583	586	Right-handed 310
Helix 45	AE9	Q	589	604	Right-handed alpha
Helix 46	AF1	Q	618	625	Right-handed alpha
Helix 47	AF2	Q	634	639	Right-handed alpha
Helix 48	AF3	P	513	531	Right-handed alpha
Helix 49	AF4	P	535	544	Right-handed alpha
Helix 50	AF5	P	583	588	Right-handed 310
Helix 51	AF6	P	589	604	Right-handed alpha
Helix 52	AF7	P	618	625	Right-handed alpha
Helix 53	AF8	P	634	639	Right-handed alpha
Helix 54	AF9	O	513	531	Right-handed alpha
Helix 55	AG1	O	535	545	Right-handed alpha
Helix 56	AG2	O	589	604	Right-handed alpha
Helix 57	AG3	O	618	625	Right-handed alpha
Helix 58	AG4	O	634	639	Right-handed alpha
Helix 59	AG5	N	513	531	Right-handed alpha
Helix 60	AG6	N	535	544	Right-handed alpha
Helix 61	AG7	N	583	586	Right-handed 310
Helix 62	AG8	N	589	604	Right-handed alpha
Helix 63	AG9	N	618	625	Right-handed alpha
Helix 64	AH1	N	634	639	Right-handed alpha
Helix 65	AH2	M	513	531	Right-handed alpha
Helix 66	AH3	M	535	544	Right-handed alpha
Helix 67	AH4	M	583	586	Right-handed 310
Helix 68	AH5	M	589	604	Right-handed alpha
Helix 69	AH6	M	615	625	Right-handed alpha
Helix 70	AH7	M	634	639	Right-handed alpha
Helix 71	AH8	L	514	531	Right-handed alpha
Helix 72	AH9	L	535	545	Right-handed alpha
Helix 73	AI1	L	583	588	Right-handed 310
Helix 74	AI2	L	589	605	Right-handed alpha
Helix 75	AI3	L	615	625	Right-handed alpha
Helix 76	AI4	L	634	639	Right-handed alpha
Helix 77	AI5	K	514	531	Right-handed alpha
Helix 78	AI6	K	535	544	Right-handed alpha
Helix 79	AI7	K	583	586	Right-handed 310
Helix 80	AI8	K	589	604	Right-handed alpha
Helix 81	AI9	K	618	625	Right-handed alpha
Helix 82	AJ1	K	634	639	Right-handed alpha
Helix 83	AJ2	J	514	531	Right-handed alpha
Helix 84	AJ3	J	535	544	Right-handed alpha
Helix 85	AJ4	J	589	605	Right-handed alpha
Helix 86	AJ5	J	618	625	Right-handed alpha
Helix 87	AJ6	J	634	639	Right-handed alpha
Helix 88	AJ7	F	514	531	Right-handed alpha
Helix 89	AJ8	F	535	544	Right-handed alpha
Helix 90	AJ9	F	589	604	Right-handed alpha
Helix 91	AK1	F	618	625	Right-handed alpha
Helix 92	AK2	F	634	638	Right-handed 310
Helix 93	AK3	C	514	530	Right-handed alpha
Helix 94	AK4	C	535	544	Right-handed alpha
Helix 95	AK5	C	583	586	Right-handed 310
Helix 96	AK6	C	589	604	Right-handed alpha
Helix 97	AK7	C	615	625	Right-handed alpha
Helix 98	AK8	C	634	639	Right-handed alpha
Helix 99	AK9	B	514	531	Right-handed alpha
Helix 100	AL1	B	535	544	Right-handed alpha
Helix 101	AL2	B	583	586	Right-handed 310
Helix 102	AL3	B	589	604	Right-handed alpha
Helix 103	AL4	B	618	625	Right-handed alpha
Helix 104	AL5	B	634	639	Right-handed alpha
Helix 105	AL6	D	514	531	Right-handed alpha
Helix 106	AL7	D	535	544	Right-handed alpha
Helix 107	AL8	D	583	586	Right-handed 310
Helix 108	AL9	D	589	604	Right-handed alpha
Helix 109	AM1	D	618	625	Right-handed alpha
Helix 110	AM2	D	634	639	Right-handed alpha
Helix 111	AM3	E	513	531	Right-handed alpha
Helix 112	AM4	E	535	544	Right-handed alpha
Helix 113	AM5	E	583	586	Right-handed 310
Helix 114	AM6	E	589	604	Right-handed alpha
Helix 115	AM7	E	615	625	Right-handed alpha
Helix 116	AM8	E	634	639	Right-handed alpha
Helix 117	AM9	G	514	530	Right-handed alpha
Helix 118	AN1	G	535	544	Right-handed alpha
Helix 119	AN2	G	583	586	Right-handed 310
Helix 120	AN3	G	589	605	Right-handed alpha
Helix 121	AN4	G	618	625	Right-handed alpha
Helix 122	AN5	G	634	639	Right-handed alpha
Helix 123	AN6	H	515	531	Right-handed alpha
Helix 124	AN7	H	535	544	Right-handed alpha
Helix 125	AN8	H	583	586	Right-handed 310
Helix 126	AN9	H	589	605	Right-handed alpha
Helix 127	AO1	H	615	617	Right-handed 310
Helix 128	AO2	H	618	625	Right-handed alpha
Helix 129	AO3	H	634	639	Right-handed alpha
Helix 130	AO4	I	513	531	Right-handed alpha
Helix 131	AO5	I	535	544	Right-handed alpha
Helix 132	AO6	I	583	586	Right-handed 310
Helix 133	AO7	I	589	604	Right-handed alpha
Helix 134	AO8	I	618	625	Right-handed alpha
Helix 135	AO9	I	634	639	Right-handed alpha
Helix 136	AP1	X	513	531	Right-handed alpha
Helix 137	AP2	X	535	544	Right-handed alpha
Helix 138	AP3	X	590	605	Right-handed alpha
Helix 139	AP4	X	618	623	Right-handed alpha
Helix 140	AP5	X	624	626	Right-handed 310
Helix 141	AP6	X	634	638	Right-handed 310

There are 24 sheets in PDB entry 5TRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	504	first strand
Strand 2	A	549	555	anti-parallel
Strand 3	A	558	568	anti-parallel
Strand 4	A	573	581	anti-parallel
Strand 5	A	609	614	parallel
Strand 6	A	649	654	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	500	505	first strand
Strand 2	W	548	555	anti-parallel
Strand 3	W	558	568	anti-parallel
Strand 4	W	573	581	anti-parallel
Strand 5	W	609	614	parallel
Strand 6	W	649	654	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	500	504	first strand
Strand 2	V	548	555	anti-parallel
Strand 3	V	558	568	anti-parallel
Strand 4	V	573	581	anti-parallel
Strand 5	V	609	614	parallel
Strand 6	V	649	654	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	499	504	first strand
Strand 2	U	549	555	anti-parallel
Strand 3	U	558	568	anti-parallel
Strand 4	U	573	581	anti-parallel
Strand 5	U	609	614	parallel
Strand 6	U	649	654	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	499	505	first strand
Strand 2	T	549	555	anti-parallel
Strand 3	T	558	567	anti-parallel
Strand 4	T	574	581	anti-parallel
Strand 5	T	609	614	parallel
Strand 6	T	649	654	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	500	504	first strand
Strand 2	S	549	554	anti-parallel
Strand 3	S	561	568	anti-parallel
Strand 4	S	573	581	anti-parallel
Strand 5	S	609	614	parallel
Strand 6	S	649	654	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	499	504	first strand
Strand 2	R	549	555	anti-parallel
Strand 3	R	558	568	anti-parallel
Strand 4	R	573	581	anti-parallel
Strand 5	R	609	614	parallel
Strand 6	R	649	654	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	500	504	first strand
Strand 2	Q	549	555	anti-parallel
Strand 3	Q	558	568	anti-parallel
Strand 4	Q	573	581	anti-parallel
Strand 5	Q	609	614	parallel
Strand 6	Q	649	654	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	500	504	first strand
Strand 2	P	549	555	anti-parallel
Strand 3	P	558	568	anti-parallel
Strand 4	P	573	581	anti-parallel
Strand 5	P	609	615	parallel
Strand 6	P	648	654	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	500	504	first strand
Strand 2	O	548	554	anti-parallel
Strand 3	O	559	568	anti-parallel
Strand 4	O	573	581	anti-parallel
Strand 5	O	609	614	parallel
Strand 6	O	649	654	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	499	504	first strand
Strand 2	N	548	555	anti-parallel
Strand 3	N	558	568	anti-parallel
Strand 4	N	573	581	anti-parallel
Strand 5	N	609	614	parallel
Strand 6	N	649	654	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	500	504	first strand
Strand 2	M	549	554	anti-parallel
Strand 3	M	559	567	anti-parallel
Strand 4	M	574	581	anti-parallel
Strand 5	M	609	614	parallel
Strand 6	M	649	654	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	500	504	first strand
Strand 2	L	549	555	anti-parallel
Strand 3	L	558	567	anti-parallel
Strand 4	L	573	581	anti-parallel
Strand 5	L	609	614	parallel
Strand 6	L	649	654	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	499	504	first strand
Strand 2	K	549	555	anti-parallel
Strand 3	K	558	568	anti-parallel
Strand 4	K	573	581	anti-parallel
Strand 5	K	609	614	parallel
Strand 6	K	649	654	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	499	504	first strand
Strand 2	J	548	555	anti-parallel
Strand 3	J	558	568	anti-parallel
Strand 4	J	573	581	anti-parallel
Strand 5	J	609	614	parallel
Strand 6	J	649	654	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	499	505	first strand
Strand 2	F	549	555	anti-parallel
Strand 3	F	558	568	anti-parallel
Strand 4	F	573	581	anti-parallel
Strand 5	F	609	614	parallel
Strand 6	F	649	654	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	504	first strand
Strand 2	C	548	555	anti-parallel
Strand 3	C	558	567	anti-parallel
Strand 4	C	573	581	anti-parallel
Strand 5	C	609	614	parallel
Strand 6	C	649	654	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	505	first strand
Strand 2	B	549	555	anti-parallel
Strand 3	B	558	568	anti-parallel
Strand 4	B	573	581	anti-parallel
Strand 5	B	609	614	parallel
Strand 6	B	649	654	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	500	504	first strand
Strand 2	D	549	555	anti-parallel
Strand 3	D	558	568	anti-parallel
Strand 4	D	573	581	anti-parallel
Strand 5	D	609	614	parallel
Strand 6	D	649	654	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	499	505	first strand
Strand 2	E	549	555	anti-parallel
Strand 3	E	558	568	anti-parallel
Strand 4	E	573	581	anti-parallel
Strand 5	E	609	614	parallel
Strand 6	E	649	654	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	499	504	first strand
Strand 2	G	549	555	anti-parallel
Strand 3	G	558	567	anti-parallel
Strand 4	G	574	581	anti-parallel
Strand 5	G	609	614	parallel
Strand 6	G	649	654	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	499	504	first strand
Strand 2	H	549	555	anti-parallel
Strand 3	H	558	567	anti-parallel
Strand 4	H	574	581	anti-parallel
Strand 5	H	609	614	parallel
Strand 6	H	649	654	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	499	504	first strand
Strand 2	I	548	555	anti-parallel
Strand 3	I	558	567	anti-parallel
Strand 4	I	574	581	anti-parallel
Strand 5	I	609	614	parallel
Strand 6	I	649	654	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	500	504	first strand
Strand 2	X	548	555	anti-parallel
Strand 3	X	558	568	anti-parallel
Strand 4	X	573	581	anti-parallel
Strand 5	X	609	614	parallel
Strand 6	X	649	654	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TRM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TRM