Analysis of interatomic Contacts of Structural Units in PDB entry:
5TRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TRU entry

There are 6 chains in PDB entry 5TRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLU 1GLY 213
H
 GLN 1SER 220
l
 GLU 1ARG 212
h
 GLN 1PRO 218
c
 ALA 2ASP 118
C
 ALA 2ILE 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5TRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
80 84Right-handed 310
Helix 2
AA2
L
122 129Right-handed alpha
Helix 3
AA3
L
184 188Right-handed alpha
Helix 4
AA4
H
28 32Right-handed 310
Helix 5
AA5
H
62 65Right-handed 310
Helix 6
AA6
H
87 91Right-handed 310
Helix 7
AA7
H
191 195Right-handed 310
Helix 8
AA8
l
29 32Right-handed 310
Helix 9
AA9
l
80 84Right-handed 310
Helix 10
AB1
l
122 127Right-handed alpha
Helix 11
AB2
l
184 188Right-handed alpha
Helix 12
AB3
h
28 32Right-handed 310
Helix 13
AB4
h
74 76Right-handed 310
Helix 14
AB5
h
87 91Right-handed 310
Helix 15
AB6
h
161 163Right-handed 310
Helix 16
AB7
C
85 89Right-handed 310
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There are 28 sheets in PDB entry 5TRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
98 99anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 155first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
192 198anti-parallel
Strand 4
L
206 211anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 116parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 116parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
105 108anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 150anti-parallel
Strand 3
H
181 189anti-parallel
Strand 4
H
169 170anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 150anti-parallel
Strand 3
H
181 189anti-parallel
Strand 4
H
174 175anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 159first strand
Strand 2
H
199 205anti-parallel
Strand 3
H
210 216anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
4 7first strand
Strand 2
l
19 25anti-parallel
Strand 3
l
71 76anti-parallel
Strand 4
l
63 68anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
10 13first strand
Strand 2
l
103 107parallel
Strand 3
l
86 91anti-parallel
Strand 4
l
34 39anti-parallel
Strand 5
l
46 50anti-parallel
Strand 6
l
54 55anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
10 13first strand
Strand 2
l
103 107parallel
Strand 3
l
86 91anti-parallel
Strand 4
l
98 99anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
115 119first strand
Strand 2
l
130 140anti-parallel
Strand 3
l
174 183anti-parallel
Strand 4
l
160 164anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
146 151first strand
Strand 2
l
192 198anti-parallel
Strand 3
l
206 211anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
3 7first strand
Strand 2
h
18 25anti-parallel
Strand 3
h
78 83anti-parallel
Strand 4
h
68 73anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
11 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 99anti-parallel
Strand 4
h
34 39anti-parallel
Strand 5
h
46 51anti-parallel
Strand 6
h
58 60anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
11 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 99anti-parallel
Strand 4
h
105 108anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
125 129first strand
Strand 2
h
141 150anti-parallel
Strand 3
h
181 189anti-parallel
Strand 4
h
168 170anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
125 129first strand
Strand 2
h
141 150anti-parallel
Strand 3
h
181 189anti-parallel
Strand 4
h
174 175anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
156 159first strand
Strand 2
h
199 205anti-parallel
Strand 3
h
210 216anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
4 6first strand
Strand 2
c
19 26anti-parallel
Strand 3
c
76 81anti-parallel
Strand 4
c
71 73anti-parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
10 12first strand
Strand 2
c
112 115parallel
Strand 3
c
90 100anti-parallel
Strand 4
c
33 42anti-parallel
Strand 5
c
45 55anti-parallel
Strand 6
c
61 62anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
10 12first strand
Strand 2
c
112 115parallel
Strand 3
c
90 100anti-parallel
Strand 4
c
105 108anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
19 26anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
68 69anti-parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
112 115parallel
Strand 3
C
90 100anti-parallel
Strand 4
C
33 42anti-parallel
Strand 5
C
45 55anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
112 115parallel
Strand 3
C
90 100anti-parallel
Strand 4
C
105 108anti-parallel
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