Analysis of interatomic Contacts of Structural Units in PDB entry:
5TRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TRW entry

There is 1 chain in PDB entry 5TRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5TRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
56 70Right-handed alpha
Helix 4
AA4
A
71 76Right-handed 310
Helix 5
AA5
A
86 104Right-handed alpha
Helix 6
AA6
A
126 134Right-handed alpha
Helix 7
AA7
A
135 138Right-handed 310
Helix 8
AA8
A
145 154Right-handed alpha
Helix 9
AA9
A
159 172Right-handed alpha
Helix 10
AB1
A
219 234Right-handed alpha
Helix 11
AB2
A
237 259Right-handed alpha
Helix 12
AB3
A
269 275Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5TRW.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
4 12parallel
Strand 4
A
78 81parallel
Strand 5
A
108 111parallel
Strand 6
A
141 142parallel
Strand 7
A
177 183parallel
Strand 8
A
192 199anti-parallel
Strand 9
A
203 209anti-parallel
Strand 10
A
283 284anti-parallel
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