Analysis of interatomic Contacts of Structural Units in PDB entry:
5TS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TS3 entry

There are 2 chains in PDB entry 5TS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 265
B
 HIS -2ALA 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 5TS3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
29 42Right-handed alpha
Helix 3
AA3
A
52 65Right-handed alpha
Helix 4
AA4
A
80 91Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
119 131Right-handed alpha
Helix 7
AA7
A
131 149Right-handed alpha
Helix 8
AA8
A
158 162Right-handed 310
Helix 9
AA9
A
169 191Right-handed alpha
Helix 10
AB1
A
192 194Right-handed 310
Helix 11
AB2
A
208 213Right-handed alpha
Helix 12
AB3
A
214 224Right-handed alpha
Helix 13
AB4
A
232 244Right-handed alpha
Helix 14
AB5
A
245 249Right-handed 310
Helix 15
AB6
B
8 13Right-handed alpha
Helix 16
AB7
B
29 42Right-handed alpha
Helix 17
AB8
B
52 65Right-handed alpha
Helix 18
AB9
B
80 92Right-handed alpha
Helix 19
AC1
B
114 118Right-handed 310
Helix 20
AC2
B
119 131Right-handed alpha
Helix 21
AC3
B
131 149Right-handed alpha
Helix 22
AC4
B
158 162Right-handed 310
Helix 23
AC5
B
169 191Right-handed alpha
Helix 24
AC6
B
192 194Right-handed 310
Helix 25
AC7
B
216 224Right-handed alpha
Helix 26
AC8
B
232 244Right-handed alpha
Helix 27
AC9
B
245 249Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 5TS3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
45 50parallel
Strand 3
A
21 25parallel
Strand 4
A
97 100parallel
Strand 5
A
152 156parallel
Strand 6
A
196 202parallel
Strand 7
A
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 75first strand
Strand 2
B
45 50parallel
Strand 3
B
21 25parallel
Strand 4
B
97 99parallel
Strand 5
B
152 156parallel
Strand 6
B
196 202parallel
Strand 7
B
255 258parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il