Analysis of interatomic Contacts of Structural Units in PDB entry:
5TS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TS5 entry

There are 4 chains in PDB entry 5TS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	SER 484
B	ARG 4	SER 484
C	ASN 5	SER 484
D	PRO 6	SER 484

There are 99 helices in PDB entry 5TS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	12	Right-handed 310
Helix 2	AA2	A	15	26	Right-handed alpha
Helix 3	AA3	A	42	55	Right-handed alpha
Helix 4	AA4	A	95	105	Right-handed alpha
Helix 5	AA5	A	130	136	Right-handed alpha
Helix 6	AA6	A	137	141	Right-handed 310
Helix 7	AA7	A	145	149	Right-handed 310
Helix 8	AA8	A	152	161	Right-handed alpha
Helix 9	AA9	A	161	171	Right-handed alpha
Helix 10	AB1	A	172	181	Right-handed alpha
Helix 11	AB2	A	184	192	Right-handed alpha
Helix 12	AB3	A	196	207	Right-handed alpha
Helix 13	AB4	A	209	213	Right-handed 310
Helix 14	AB5	A	216	228	Right-handed alpha
Helix 15	AB6	A	241	251	Right-handed alpha
Helix 16	AB7	A	295	302	Right-handed alpha
Helix 17	AB8	A	309	319	Right-handed alpha
Helix 18	AB9	A	334	340	Right-handed 310
Helix 19	AC1	A	375	380	Right-handed alpha
Helix 20	AC2	A	385	402	Right-handed alpha
Helix 21	AC3	A	404	411	Right-handed alpha
Helix 22	AC4	A	421	423	Right-handed 310
Helix 23	AC5	A	436	447	Right-handed alpha
Helix 24	AC6	A	456	460	Right-handed 310
Helix 25	AC7	A	465	484	Right-handed alpha
Helix 26	AC8	B	7	12	Right-handed 310
Helix 27	AC9	B	15	26	Right-handed alpha
Helix 28	AD1	B	42	55	Right-handed alpha
Helix 29	AD2	B	95	105	Right-handed alpha
Helix 30	AD3	B	130	136	Right-handed alpha
Helix 31	AD4	B	137	141	Right-handed 310
Helix 32	AD5	B	145	149	Right-handed 310
Helix 33	AD6	B	152	161	Right-handed alpha
Helix 34	AD7	B	161	171	Right-handed alpha
Helix 35	AD8	B	172	181	Right-handed alpha
Helix 36	AD9	B	184	192	Right-handed alpha
Helix 37	AE1	B	196	207	Right-handed alpha
Helix 38	AE2	B	209	213	Right-handed 310
Helix 39	AE3	B	216	228	Right-handed alpha
Helix 40	AE4	B	241	251	Right-handed alpha
Helix 41	AE5	B	295	302	Right-handed alpha
Helix 42	AE6	B	309	319	Right-handed alpha
Helix 43	AE7	B	334	340	Right-handed 310
Helix 44	AE8	B	375	380	Right-handed alpha
Helix 45	AE9	B	385	401	Right-handed alpha
Helix 46	AF1	B	404	411	Right-handed alpha
Helix 47	AF2	B	421	423	Right-handed 310
Helix 48	AF3	B	436	447	Right-handed alpha
Helix 49	AF4	B	456	460	Right-handed 310
Helix 50	AF5	B	465	483	Right-handed alpha
Helix 51	AF6	C	8	12	Right-handed 310
Helix 52	AF7	C	15	26	Right-handed alpha
Helix 53	AF8	C	42	55	Right-handed alpha
Helix 54	AF9	C	95	105	Right-handed alpha
Helix 55	AG1	C	130	136	Right-handed alpha
Helix 56	AG2	C	137	141	Right-handed 310
Helix 57	AG3	C	145	149	Right-handed 310
Helix 58	AG4	C	152	161	Right-handed alpha
Helix 59	AG5	C	161	171	Right-handed alpha
Helix 60	AG6	C	172	181	Right-handed alpha
Helix 61	AG7	C	184	192	Right-handed alpha
Helix 62	AG8	C	196	207	Right-handed alpha
Helix 63	AG9	C	209	213	Right-handed 310
Helix 64	AH1	C	216	228	Right-handed alpha
Helix 65	AH2	C	241	251	Right-handed alpha
Helix 66	AH3	C	295	302	Right-handed alpha
Helix 67	AH4	C	309	319	Right-handed alpha
Helix 68	AH5	C	334	340	Right-handed 310
Helix 69	AH6	C	375	380	Right-handed alpha
Helix 70	AH7	C	385	401	Right-handed alpha
Helix 71	AH8	C	404	411	Right-handed alpha
Helix 72	AH9	C	421	423	Right-handed 310
Helix 73	AI1	C	436	447	Right-handed alpha
Helix 74	AI2	C	456	460	Right-handed 310
Helix 75	AI3	C	465	483	Right-handed alpha
Helix 76	AI4	D	7	12	Right-handed 310
Helix 77	AI5	D	15	26	Right-handed alpha
Helix 78	AI6	D	42	55	Right-handed alpha
Helix 79	AI7	D	95	105	Right-handed alpha
Helix 80	AI8	D	130	136	Right-handed alpha
Helix 81	AI9	D	137	141	Right-handed 310
Helix 82	AJ1	D	145	149	Right-handed 310
Helix 83	AJ2	D	152	161	Right-handed alpha
Helix 84	AJ3	D	161	171	Right-handed alpha
Helix 85	AJ4	D	172	181	Right-handed alpha
Helix 86	AJ5	D	184	192	Right-handed alpha
Helix 87	AJ6	D	196	207	Right-handed alpha
Helix 88	AJ7	D	216	228	Right-handed alpha
Helix 89	AJ8	D	241	251	Right-handed alpha
Helix 90	AJ9	D	295	302	Right-handed alpha
Helix 91	AK1	D	309	319	Right-handed alpha
Helix 92	AK2	D	334	340	Right-handed 310
Helix 93	AK3	D	375	380	Right-handed alpha
Helix 94	AK4	D	385	401	Right-handed alpha
Helix 95	AK5	D	404	411	Right-handed alpha
Helix 96	AK6	D	421	423	Right-handed 310
Helix 97	AK7	D	436	447	Right-handed alpha
Helix 98	AK8	D	456	460	Right-handed 310
Helix 99	AK9	D	465	483	Right-handed alpha

There are 24 sheets in PDB entry 5TS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	58	62	parallel
Strand 3	A	35	39	parallel
Strand 4	A	289	292	parallel
Strand 5	A	452	454	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	82	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	233	236	anti-parallel
Strand 3	A	109	112	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	129	first strand
Strand 2	A	120	123	anti-parallel
Strand 3	A	345	348	parallel
Strand 4	A	354	356	anti-parallel
Strand 5	A	367	374	anti-parallel
Strand 6	A	324	331	anti-parallel
Strand 7	A	412	419	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	287	first strand
Strand 2	A	271	277	anti-parallel
Strand 3	A	259	266	anti-parallel
Strand 4	A	303	305	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	430	431	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	58	62	parallel
Strand 3	B	35	39	parallel
Strand 4	B	289	292	parallel
Strand 5	B	452	454	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	82	85	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	233	236	anti-parallel
Strand 3	B	109	112	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	129	first strand
Strand 2	B	120	123	anti-parallel
Strand 3	B	345	348	parallel
Strand 4	B	354	356	anti-parallel
Strand 5	B	367	374	anti-parallel
Strand 6	B	324	331	anti-parallel
Strand 7	B	412	419	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	287	first strand
Strand 2	B	271	277	anti-parallel
Strand 3	B	259	266	anti-parallel
Strand 4	B	303	305	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	430	431	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	58	62	parallel
Strand 3	C	35	39	parallel
Strand 4	C	289	292	parallel
Strand 5	C	452	454	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	77	first strand
Strand 2	C	82	85	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	233	236	anti-parallel
Strand 3	C	109	112	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	129	first strand
Strand 2	C	120	123	anti-parallel
Strand 3	C	345	348	parallel
Strand 4	C	354	356	anti-parallel
Strand 5	C	367	374	anti-parallel
Strand 6	C	324	331	anti-parallel
Strand 7	C	412	419	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	287	first strand
Strand 2	C	271	277	anti-parallel
Strand 3	C	259	266	anti-parallel
Strand 4	C	303	305	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	430	431	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	58	62	parallel
Strand 3	D	35	39	parallel
Strand 4	D	289	292	parallel
Strand 5	D	452	454	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	77	first strand
Strand 2	D	82	85	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	233	236	anti-parallel
Strand 3	D	109	112	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	120	123	anti-parallel
Strand 3	D	345	348	parallel
Strand 4	D	354	356	anti-parallel
Strand 5	D	367	374	anti-parallel
Strand 6	D	324	331	anti-parallel
Strand 7	D	412	419	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	287	first strand
Strand 2	D	271	277	anti-parallel
Strand 3	D	259	266	anti-parallel
Strand 4	D	303	305	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	322	first strand
Strand 2	D	430	431	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TS5