Analysis of interatomic Contacts of Structural Units in PDB entry:
5TSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TSP entry

There are 2 chains in PDB entry 5TSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 243	SER 690
B	VAL 243	SER 690

There are 6 helices in PDB entry 5TSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	258	262	Right-handed 310
Helix 2	AA2	A	449	454	Right-handed alpha
Helix 3	AA3	A	684	690	Right-handed alpha
Helix 4	AA4	B	258	262	Right-handed 310
Helix 5	AA5	B	449	454	Right-handed alpha
Helix 6	AA6	B	684	689	Right-handed alpha

There are 20 sheets in PDB entry 5TSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	255	first strand
Strand 2	A	678	683	anti-parallel
Strand 3	A	666	670	anti-parallel
Strand 4	A	656	660	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	272	first strand
Strand 2	A	278	285	anti-parallel
Strand 3	A	297	304	anti-parallel
Strand 4	A	315	318	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	448	first strand
Strand 2	A	430	436	anti-parallel
Strand 3	A	340	347	anti-parallel
Strand 4	A	325	333	anti-parallel
Strand 5	A	466	467	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	A	368	374	anti-parallel
Strand 3	A	380	384	anti-parallel
Strand 4	A	387	389	anti-parallel
Strand 5	A	395	400	anti-parallel
Strand 6	A	405	408	anti-parallel
Strand 7	A	411	415	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	A	368	374	anti-parallel
Strand 3	A	424	425	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	480	487	anti-parallel
Strand 3	A	469	470	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	480	487	anti-parallel
Strand 3	A	493	500	anti-parallel
Strand 4	A	508	509	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	524	525	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	544	first strand
Strand 2	A	550	556	anti-parallel
Strand 3	A	560	566	anti-parallel
Strand 4	A	578	584	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	594	first strand
Strand 2	A	604	610	anti-parallel
Strand 3	A	616	630	anti-parallel
Strand 4	A	636	652	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	255	first strand
Strand 2	B	678	683	anti-parallel
Strand 3	B	666	671	anti-parallel
Strand 4	B	656	660	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	272	first strand
Strand 2	B	278	285	anti-parallel
Strand 3	B	297	304	anti-parallel
Strand 4	B	315	318	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	448	first strand
Strand 2	B	430	436	anti-parallel
Strand 3	B	340	347	anti-parallel
Strand 4	B	325	333	anti-parallel
Strand 5	B	466	467	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	365	first strand
Strand 2	B	368	374	anti-parallel
Strand 3	B	380	384	anti-parallel
Strand 4	B	387	389	anti-parallel
Strand 5	B	395	400	anti-parallel
Strand 6	B	405	408	anti-parallel
Strand 7	B	411	415	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	365	first strand
Strand 2	B	368	374	anti-parallel
Strand 3	B	424	425	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	480	487	anti-parallel
Strand 3	B	469	470	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	480	487	anti-parallel
Strand 3	B	493	500	anti-parallel
Strand 4	B	508	509	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	518	first strand
Strand 2	B	524	525	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	544	first strand
Strand 2	B	550	556	anti-parallel
Strand 3	B	560	566	anti-parallel
Strand 4	B	578	584	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	594	first strand
Strand 2	B	604	610	anti-parallel
Strand 3	B	616	630	anti-parallel
Strand 4	B	636	652	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TSP