Analysis of interatomic Contacts of Structural Units in PDB entry:
5TSR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TSR entry

There are 4 chains in PDB entry 5TSR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ARG 159
B
 GLY 298ARG 446
C
 ASN 5LEU 158
D
 GLY 298ARG 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5TSR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 40Right-handed alpha
Helix 2
AA2
A
55 61Right-handed alpha
Helix 3
AA3
A
77 95Right-handed alpha
Helix 4
AA4
A
109 122Right-handed alpha
Helix 5
AA5
A
125 137Right-handed alpha
Helix 6
AA6
A
143 148Right-handed alpha
Helix 7
AA7
B
299 309Right-handed alpha
Helix 8
AA8
B
313 317Right-handed 310
Helix 9
AA9
B
322 324Right-handed 310
Helix 10
AB1
B
334 345Right-handed alpha
Helix 11
AB2
B
366 370Right-handed 310
Helix 12
AB3
B
378 386Right-handed alpha
Helix 13
AB4
B
398 407Right-handed alpha
Helix 14
AB5
B
437 446Right-handed alpha
Helix 15
AB6
C
29 41Right-handed alpha
Helix 16
AB7
C
55 61Right-handed alpha
Helix 17
AB8
C
77 95Right-handed alpha
Helix 18
AB9
C
109 122Right-handed alpha
Helix 19
AC1
C
125 137Right-handed alpha
Helix 20
AC2
C
142 151Right-handed alpha
Helix 21
AC3
D
299 308Right-handed alpha
Helix 22
AC4
D
309 311Right-handed 310
Helix 23
AC5
D
313 318Right-handed alpha
Helix 24
AC6
D
322 324Right-handed 310
Helix 25
AC7
D
334 343Right-handed alpha
Helix 26
AC8
D
366 370Right-handed 310
Helix 27
AC9
D
378 384Right-handed alpha
Helix 28
AD1
D
398 407Right-handed alpha
Helix 29
AD2
D
437 446Right-handed alpha
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There are 6 sheets in PDB entry 5TSR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
99 103parallel
Strand 4
A
42 47parallel
Strand 5
A
64 67parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 320first strand
Strand 2
B
428 436anti-parallel
Strand 3
B
413 420anti-parallel
Strand 4
B
391 394parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 328first strand
Strand 2
B
348 352parallel
Strand 3
B
359 364anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
17 22anti-parallel
Strand 3
C
99 103parallel
Strand 4
C
42 47parallel
Strand 5
C
64 67parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
319 320first strand
Strand 2
D
428 436anti-parallel
Strand 3
D
413 420anti-parallel
Strand 4
D
391 394parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
327 328first strand
Strand 2
D
348 352parallel
Strand 3
D
359 364anti-parallel
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