Analysis of interatomic Contacts of Structural Units in PDB entry:
5TT3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TT3 entry

There are 8 chains in PDB entry 5TT3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 22	ARG 247
B	LYS 22	ARG 247
C	THR 21	ARG 247
D	TRP 23	THR 246
E	LYS 22	ARG 247
F	TRP 23	ARG 247
G	THR 21	ARG 247
H	TRP 23	ARG 247

There are 54 helices in PDB entry 5TT3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	33	Right-handed 310
Helix 2	AA2	A	34	39	Right-handed alpha
Helix 3	AA3	A	40	42	Right-handed 310
Helix 4	AA4	A	43	48	Right-handed alpha
Helix 5	AA5	A	155	162	Right-handed alpha
Helix 6	AA6	A	173	177	Right-handed alpha
Helix 7	AA7	A	211	222	Right-handed alpha
Helix 8	AA8	B	34	39	Right-handed alpha
Helix 9	AA9	B	40	42	Right-handed 310
Helix 10	AB1	B	43	48	Right-handed alpha
Helix 11	AB2	B	173	177	Right-handed alpha
Helix 12	AB3	B	211	222	Right-handed alpha
Helix 13	AB4	C	31	33	Right-handed 310
Helix 14	AB5	C	34	39	Right-handed alpha
Helix 15	AB6	C	40	42	Right-handed 310
Helix 16	AB7	C	43	48	Right-handed alpha
Helix 17	AB8	C	152	154	Right-handed 310
Helix 18	AB9	C	155	162	Right-handed alpha
Helix 19	AC1	C	173	177	Right-handed alpha
Helix 20	AC2	C	211	222	Right-handed alpha
Helix 21	AC3	D	31	33	Right-handed 310
Helix 22	AC4	D	34	39	Right-handed alpha
Helix 23	AC5	D	40	42	Right-handed 310
Helix 24	AC6	D	43	48	Right-handed alpha
Helix 25	AC7	D	155	162	Right-handed alpha
Helix 26	AC8	D	173	177	Right-handed alpha
Helix 27	AC9	D	211	217	Right-handed alpha
Helix 28	AD1	E	31	33	Right-handed 310
Helix 29	AD2	E	34	39	Right-handed alpha
Helix 30	AD3	E	40	42	Right-handed 310
Helix 31	AD4	E	43	48	Right-handed alpha
Helix 32	AD5	E	154	162	Right-handed alpha
Helix 33	AD6	E	173	177	Right-handed alpha
Helix 34	AD7	E	211	222	Right-handed alpha
Helix 35	AD8	F	31	33	Right-handed 310
Helix 36	AD9	F	34	39	Right-handed alpha
Helix 37	AE1	F	40	42	Right-handed 310
Helix 38	AE2	F	43	48	Right-handed alpha
Helix 39	AE3	F	155	162	Right-handed alpha
Helix 40	AE4	F	172	177	Right-handed alpha
Helix 41	AE5	F	211	222	Right-handed alpha
Helix 42	AE6	G	31	33	Right-handed 310
Helix 43	AE7	G	34	39	Right-handed alpha
Helix 44	AE8	G	40	42	Right-handed 310
Helix 45	AE9	G	43	48	Right-handed alpha
Helix 46	AF1	G	155	161	Right-handed alpha
Helix 47	AF2	G	211	222	Right-handed alpha
Helix 48	AF3	H	31	33	Right-handed 310
Helix 49	AF4	H	34	39	Right-handed alpha
Helix 50	AF5	H	40	42	Right-handed 310
Helix 51	AF6	H	43	48	Right-handed alpha
Helix 52	AF7	H	155	162	Right-handed alpha
Helix 53	AF8	H	172	177	Right-handed alpha
Helix 54	AF9	H	211	222	Right-handed alpha

There are 27 sheets in PDB entry 5TT3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	118	119	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	240	245	parallel
Strand 3	A	180	189	anti-parallel
Strand 4	A	197	210	anti-parallel
Strand 5	A	139	148	parallel
Strand 6	A	126	133	anti-parallel
Strand 7	A	102	112	anti-parallel
Strand 8	A	96	99	anti-parallel
Strand 9	A	68	71	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	240	245	parallel
Strand 3	A	180	189	anti-parallel
Strand 4	A	197	210	anti-parallel
Strand 5	A	139	148	parallel
Strand 6	A	126	133	anti-parallel
Strand 7	A	102	112	anti-parallel
Strand 8	A	86	90	anti-parallel
Strand 9	A	79	83	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	171	172	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	118	119	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	240	245	parallel
Strand 3	B	180	189	anti-parallel
Strand 4	B	197	210	anti-parallel
Strand 5	B	139	148	parallel
Strand 6	B	127	133	anti-parallel
Strand 7	B	102	111	anti-parallel
Strand 8	B	96	99	anti-parallel
Strand 9	B	68	71	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	240	245	parallel
Strand 3	B	180	189	anti-parallel
Strand 4	B	197	210	anti-parallel
Strand 5	B	139	148	parallel
Strand 6	B	127	133	anti-parallel
Strand 7	B	102	111	anti-parallel
Strand 8	B	88	90	anti-parallel
Strand 9	B	79	81	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	171	172	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	118	119	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	240	245	parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	197	210	anti-parallel
Strand 5	C	139	148	parallel
Strand 6	C	126	133	anti-parallel
Strand 7	C	102	112	anti-parallel
Strand 8	C	96	99	anti-parallel
Strand 9	C	68	71	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	240	245	parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	197	210	anti-parallel
Strand 5	C	139	148	parallel
Strand 6	C	126	133	anti-parallel
Strand 7	C	102	112	anti-parallel
Strand 8	C	86	90	anti-parallel
Strand 9	C	79	83	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	171	172	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	240	245	parallel
Strand 3	D	68	71	parallel
Strand 4	D	96	99	anti-parallel
Strand 5	D	103	112	anti-parallel
Strand 6	D	86	90	anti-parallel
Strand 7	D	80	83	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	240	245	parallel
Strand 3	D	180	189	anti-parallel
Strand 4	D	197	204	anti-parallel
Strand 5	D	139	144	parallel
Strand 6	D	127	133	anti-parallel
Strand 7	D	103	112	anti-parallel
Strand 8	D	86	90	anti-parallel
Strand 9	D	80	83	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	118	119	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	240	245	parallel
Strand 3	E	180	189	anti-parallel
Strand 4	E	197	210	anti-parallel
Strand 5	E	139	148	parallel
Strand 6	E	126	134	anti-parallel
Strand 7	E	102	112	anti-parallel
Strand 8	E	96	99	anti-parallel
Strand 9	E	68	71	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	240	245	parallel
Strand 3	E	180	189	anti-parallel
Strand 4	E	197	210	anti-parallel
Strand 5	E	139	148	parallel
Strand 6	E	126	134	anti-parallel
Strand 7	E	102	112	anti-parallel
Strand 8	E	86	90	anti-parallel
Strand 9	E	79	83	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	171	172	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	56	first strand
Strand 2	F	118	119	parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	61	first strand
Strand 2	F	240	245	parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	197	210	anti-parallel
Strand 5	F	139	148	parallel
Strand 6	F	126	133	anti-parallel
Strand 7	F	103	112	anti-parallel
Strand 8	F	96	99	anti-parallel
Strand 9	F	68	71	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	61	first strand
Strand 2	F	240	245	parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	197	210	anti-parallel
Strand 5	F	139	148	parallel
Strand 6	F	126	133	anti-parallel
Strand 7	F	103	112	anti-parallel
Strand 8	F	86	90	anti-parallel
Strand 9	F	79	83	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	56	first strand
Strand 2	G	118	119	parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	61	first strand
Strand 2	G	240	245	parallel
Strand 3	G	180	189	anti-parallel
Strand 4	G	197	210	anti-parallel
Strand 5	G	139	148	parallel
Strand 6	G	126	133	anti-parallel
Strand 7	G	102	112	anti-parallel
Strand 8	G	96	99	anti-parallel
Strand 9	G	68	71	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	61	first strand
Strand 2	G	240	245	parallel
Strand 3	G	180	189	anti-parallel
Strand 4	G	197	210	anti-parallel
Strand 5	G	139	148	parallel
Strand 6	G	126	133	anti-parallel
Strand 7	G	102	112	anti-parallel
Strand 8	G	86	90	anti-parallel
Strand 9	G	79	83	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	56	first strand
Strand 2	H	118	119	parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	61	first strand
Strand 2	H	240	245	parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	197	210	anti-parallel
Strand 5	H	139	148	parallel
Strand 6	H	126	133	anti-parallel
Strand 7	H	102	112	anti-parallel
Strand 8	H	96	99	anti-parallel
Strand 9	H	68	71	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	61	first strand
Strand 2	H	240	245	parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	197	210	anti-parallel
Strand 5	H	139	148	parallel
Strand 6	H	126	133	anti-parallel
Strand 7	H	102	112	anti-parallel
Strand 8	H	86	90	anti-parallel
Strand 9	H	79	83	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TT3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TT3