Analysis of interatomic Contacts of Structural Units in PDB entry:
5TT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TT5 entry

There is 1 chain in PDB entry 5TT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5TT5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 24Right-handed alpha
Helix 2
AA2
A
31 49Right-handed alpha
Helix 3
AA3
A
50 53Right-handed 310
Helix 4
AA4
A
57 61Right-handed 310
Helix 5
AA5
A
87 102Right-handed alpha
Helix 6
AA6
A
145 150Right-handed alpha
Helix 7
AA7
A
177 192Right-handed alpha
Helix 8
AA8
A
198 208Right-handed alpha
Helix 9
AA9
A
211 217Right-handed alpha
Helix 10
AB1
A
238 250Right-handed alpha
Helix 11
AB2
A
262 277Right-handed alpha
Helix 12
AB3
A
278 280Right-handed 310
Helix 13
AB4
A
293 301Right-handed alpha
Helix 14
AB5
A
360 368Right-handed alpha
Helix 15
AB6
A
392 395Right-handed 310
Helix 16
AB7
A
432 434Right-handed 310
Helix 17
AB8
A
435 444Right-handed alpha
Helix 18
AB9
A
455 465Right-handed alpha
Helix 19
AC1
A
470 476Right-handed alpha
Helix 20
AC2
A
478 484Right-handed alpha
Helix 21
AC3
A
489 504Right-handed alpha
Helix 22
AC4
A
507 515Right-handed alpha
Helix 23
AC5
A
521 533Right-handed alpha
Helix 24
AC6
A
534 541Right-handed alpha
Helix 25
AC7
A
542 548Right-handed alpha
Helix 26
AC8
A
553 566Right-handed alpha
Helix 27
AC9
A
566 579Right-handed alpha
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There are 4 sheets in PDB entry 5TT5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
141 143anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
310 314parallel
Strand 3
A
284 291anti-parallel
Strand 4
A
110 116anti-parallel
Strand 5
A
258 260anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 135first strand
Strand 2
A
119 126anti-parallel
Strand 3
A
167 175anti-parallel
Strand 4
A
221 231anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
424 426anti-parallel
Strand 3
A
336 348anti-parallel
Strand 4
A
351 357anti-parallel
Strand 5
A
386 390parallel
Strand 6
A
374 378anti-parallel
Strand 7
A
319 331anti-parallel
Strand 8
A
336 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il