Analysis of interatomic Contacts of Structural Units in PDB entry:
5TTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TTD entry

There are 2 chains in PDB entry 5TTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8LYS 499
B
 HIS 11GLY 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5TTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
72 79Right-handed alpha
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
96 103Right-handed alpha
Helix 6
AA6
A
137 147Right-handed alpha
Helix 7
AA7
A
159 170Right-handed alpha
Helix 8
AA8
A
191 207Right-handed alpha
Helix 9
AA9
A
215 225Right-handed alpha
Helix 10
AB1
A
234 236Right-handed 310
Helix 11
AB2
A
237 245Right-handed alpha
Helix 12
AB3
A
278 289Right-handed alpha
Helix 13
AB4
A
292 303Right-handed alpha
Helix 14
AB5
A
310 318Right-handed alpha
Helix 15
AB6
A
320 333Right-handed alpha
Helix 16
AB7
A
341 358Right-handed alpha
Helix 17
AB8
A
362 374Right-handed alpha
Helix 18
AB9
B
22 38Right-handed alpha
Helix 19
AC1
B
48 57Right-handed alpha
Helix 20
AC2
B
72 79Right-handed alpha
Helix 21
AC3
B
88 93Right-handed alpha
Helix 22
AC4
B
96 103Right-handed alpha
Helix 23
AC5
B
137 147Right-handed alpha
Helix 24
AC6
B
159 169Right-handed alpha
Helix 25
AC7
B
191 207Right-handed alpha
Helix 26
AC8
B
215 225Right-handed alpha
Helix 27
AC9
B
234 236Right-handed 310
Helix 28
AD1
B
237 244Right-handed alpha
Helix 29
AD2
B
278 289Right-handed alpha
Helix 30
AD3
B
292 303Right-handed alpha
Helix 31
AD4
B
310 318Right-handed alpha
Helix 32
AD5
B
320 333Right-handed alpha
Helix 33
AD6
B
341 359Right-handed alpha
Helix 34
AD7
B
362 374Right-handed alpha
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There are 14 sheets in PDB entry 5TTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
13 16parallel
Strand 3
A
65 69parallel
Strand 4
A
264 272anti-parallel
Strand 5
A
112 117anti-parallel
Strand 6
A
307 308anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
13 16parallel
Strand 3
A
65 69parallel
Strand 4
A
264 272anti-parallel
Strand 5
A
334 335parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
108 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
228 233parallel
Strand 3
A
120 124anti-parallel
Strand 4
A
248 251anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 178first strand
Strand 2
A
181 188anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
259 260anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
430 432anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 426first strand
Strand 2
A
387 392anti-parallel
Strand 3
A
491 496parallel
Strand 4
A
452 453anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 420first strand
Strand 2
A
400 407anti-parallel
Strand 3
A
436 444anti-parallel
Strand 4
A
458 467anti-parallel
Strand 5
A
473 481anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
12 16parallel
Strand 3
B
65 69parallel
Strand 4
B
264 272anti-parallel
Strand 5
B
112 117anti-parallel
Strand 6
B
307 308anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
12 16parallel
Strand 3
B
65 69parallel
Strand 4
B
264 272anti-parallel
Strand 5
B
334 335parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
108 109anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
228 233parallel
Strand 3
B
120 124anti-parallel
Strand 4
B
248 251anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 178first strand
Strand 2
B
181 188anti-parallel
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