Analysis of interatomic Contacts of Structural Units in PDB entry:
5TTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TTJ entry

There are 2 chains in PDB entry 5TTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 51	LEU 483
B	THR 47	SER 482

There are 36 helices in PDB entry 5TTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	75	Right-handed alpha
Helix 2	AA2	A	113	123	Right-handed alpha
Helix 3	AA3	A	151	167	Right-handed alpha
Helix 4	AA4	A	169	174	Right-handed alpha
Helix 5	AA5	A	183	190	Right-handed alpha
Helix 6	AA6	A	193	201	Right-handed alpha
Helix 7	AA7	A	204	220	Right-handed alpha
Helix 8	AA8	A	227	238	Right-handed alpha
Helix 9	AA9	A	241	248	Right-handed alpha
Helix 10	AB1	A	256	270	Right-handed alpha
Helix 11	AB2	A	309	316	Right-handed 310
Helix 12	AB3	A	323	333	Right-handed alpha
Helix 13	AB4	A	392	404	Right-handed alpha
Helix 14	AB5	A	434	436	Right-handed 310
Helix 15	AB6	A	437	443	Right-handed alpha
Helix 16	AB7	A	452	456	Right-handed 310
Helix 17	AB8	A	462	483	Right-handed alpha
Helix 18	AB9	B	62	75	Right-handed alpha
Helix 19	AC1	B	113	123	Right-handed alpha
Helix 20	AC2	B	151	167	Right-handed alpha
Helix 21	AC3	B	169	174	Right-handed alpha
Helix 22	AC4	B	179	182	Right-handed 310
Helix 23	AC5	B	183	190	Right-handed alpha
Helix 24	AC6	B	193	199	Right-handed alpha
Helix 25	AC7	B	204	220	Right-handed alpha
Helix 26	AC8	B	227	238	Right-handed alpha
Helix 27	AC9	B	241	248	Right-handed alpha
Helix 28	AD1	B	256	270	Right-handed alpha
Helix 29	AD2	B	309	316	Right-handed 310
Helix 30	AD3	B	323	333	Right-handed alpha
Helix 31	AD4	B	384	388	Right-handed 310
Helix 32	AD5	B	392	404	Right-handed alpha
Helix 33	AD6	B	434	436	Right-handed 310
Helix 34	AD7	B	437	443	Right-handed alpha
Helix 35	AD8	B	452	456	Right-handed 310
Helix 36	AD9	B	462	482	Right-handed alpha

There are 10 sheets in PDB entry 5TTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	79	82	parallel
Strand 3	A	54	59	parallel
Strand 4	A	298	306	parallel
Strand 5	A	289	292	anti-parallel
Strand 6	A	281	283	anti-parallel
Strand 7	A	317	319	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	79	82	parallel
Strand 3	A	54	59	parallel
Strand 4	A	298	306	parallel
Strand 5	A	448	450	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	100	103	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	252	254	anti-parallel
Strand 3	A	127	129	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	352	356	parallel
Strand 4	A	364	371	anti-parallel
Strand 5	A	375	382	anti-parallel
Strand 6	A	339	345	anti-parallel
Strand 7	A	409	415	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	79	82	parallel
Strand 3	B	54	59	parallel
Strand 4	B	298	306	parallel
Strand 5	B	289	293	anti-parallel
Strand 6	B	279	283	anti-parallel
Strand 7	B	317	319	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	79	82	parallel
Strand 3	B	54	59	parallel
Strand 4	B	298	306	parallel
Strand 5	B	448	450	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	100	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	252	254	anti-parallel
Strand 3	B	127	129	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	352	356	parallel
Strand 4	B	364	371	anti-parallel
Strand 5	B	375	382	anti-parallel
Strand 6	B	339	345	anti-parallel
Strand 7	B	409	415	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TTJ