Analysis of interatomic Contacts of Structural Units in PDB entry:
5TTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TTP entry

There are 2 chains in PDB entry 5TTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11GLN 579
B
 GLN 11GLN 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5TTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
20 54Right-handed alpha
Helix 3
AA3
A
58 109Right-handed alpha
Helix 4
AA4
A
112 117Right-handed alpha
Helix 5
AA5
A
120 130Right-handed alpha
Helix 6
AA6
A
131 161Right-handed alpha
Helix 7
AA7
A
164 214Right-handed alpha
Helix 8
AA8
A
215 221Right-handed alpha
Helix 9
AA9
A
223 276Right-handed alpha
Helix 10
AB1
A
280 296Right-handed alpha
Helix 11
AB2
A
297 321Right-handed alpha
Helix 12
AB3
A
383 390Right-handed alpha
Helix 13
AB4
A
406 410Right-handed 310
Helix 14
AB5
A
411 417Right-handed alpha
Helix 15
AB6
A
446 455Right-handed alpha
Helix 16
AB7
A
456 458Right-handed 310
Helix 17
AB8
A
483 497Right-handed alpha
Helix 18
AB9
A
513 527Right-handed alpha
Helix 19
AC1
A
538 545Right-handed alpha
Helix 20
AC2
A
561 569Right-handed alpha
Helix 21
AC3
A
569 579Right-handed alpha
Helix 22
AC4
B
12 17Right-handed alpha
Helix 23
AC5
B
20 54Right-handed alpha
Helix 24
AC6
B
58 109Right-handed alpha
Helix 25
AC7
B
112 117Right-handed alpha
Helix 26
AC8
B
120 130Right-handed alpha
Helix 27
AC9
B
131 161Right-handed alpha
Helix 28
AD1
B
164 214Right-handed alpha
Helix 29
AD2
B
215 221Right-handed alpha
Helix 30
AD3
B
223 276Right-handed alpha
Helix 31
AD4
B
280 296Right-handed alpha
Helix 32
AD5
B
297 321Right-handed alpha
Helix 33
AD6
B
383 390Right-handed alpha
Helix 34
AD7
B
406 410Right-handed 310
Helix 35
AD8
B
411 417Right-handed alpha
Helix 36
AD9
B
446 455Right-handed alpha
Helix 37
AE1
B
456 458Right-handed 310
Helix 38
AE2
B
483 497Right-handed alpha
Helix 39
AE3
B
513 527Right-handed alpha
Helix 40
AE4
B
538 545Right-handed alpha
Helix 41
AE5
B
561 569Right-handed alpha
Helix 42
AE6
B
569 579Right-handed alpha
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There are 2 sheets in PDB entry 5TTP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
547 552parallel
Strand 3
A
555 560anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 375first strand
Strand 2
B
547 552parallel
Strand 3
B
555 560anti-parallel
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