Analysis of interatomic Contacts of Structural Units in PDB entry:
5TU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TU0 entry

There is 1 chain in PDB entry 5TU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35LYS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5TU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 47Right-handed 310
Helix 2
AA2
A
48 64Right-handed alpha
Helix 3
AA3
A
73 85Right-handed alpha
Helix 4
AA4
A
98 107Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
122 129Right-handed alpha
Helix 7
AA7
A
160 168Right-handed alpha
Helix 8
AA8
A
169 174Right-handed 310
Helix 9
AA9
A
191 202Right-handed alpha
Helix 10
AB1
A
208 212Right-handed alpha
Helix 11
AB2
A
221 238Right-handed alpha
Helix 12
AB3
A
240 244Right-handed 310
Helix 13
AB4
A
245 259Right-handed alpha
Helix 14
AB5
A
268 270Right-handed 310
Helix 15
AB6
A
271 278Right-handed alpha
Helix 16
AB7
A
313 325Right-handed alpha
Helix 17
AB8
A
326 338Right-handed alpha
Helix 18
AB9
A
343 353Right-handed alpha
Helix 19
AC1
A
355 366Right-handed alpha
Helix 20
AC2
A
376 393Right-handed alpha
Helix 21
AC3
A
397 417Right-handed alpha
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There are 5 sheets in PDB entry 5TU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
66 71parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
301 307anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
340 341anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
134 135anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
264 267parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
282 285anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
213 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il