Analysis of interatomic Contacts of Structural Units in PDB entry:
5TUK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TUK entry

There are 4 chains in PDB entry 5TUK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 387
B	ILE 3	TYR 386
C	MET 1	TYR 386
D	MET 1	TYR 386

There are 48 helices in PDB entry 5TUK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	26	Right-handed alpha
Helix 2	AA2	A	50	59	Right-handed alpha
Helix 3	AA3	A	61	68	Right-handed alpha
Helix 4	AA4	A	105	116	Right-handed alpha
Helix 5	AA5	A	160	167	Right-handed alpha
Helix 6	AA6	A	168	172	Right-handed 310
Helix 7	AA7	A	234	246	Right-handed alpha
Helix 8	AA8	A	252	261	Right-handed alpha
Helix 9	AA9	A	288	293	Right-handed alpha
Helix 10	AB1	A	300	320	Right-handed alpha
Helix 11	AB2	A	322	352	Right-handed alpha
Helix 12	AB3	A	360	378	Right-handed alpha
Helix 13	AB4	B	14	26	Right-handed alpha
Helix 14	AB5	B	50	59	Right-handed alpha
Helix 15	AB6	B	61	68	Right-handed alpha
Helix 16	AB7	B	105	116	Right-handed alpha
Helix 17	AB8	B	160	167	Right-handed alpha
Helix 18	AB9	B	168	172	Right-handed 310
Helix 19	AC1	B	234	247	Right-handed alpha
Helix 20	AC2	B	252	261	Right-handed alpha
Helix 21	AC3	B	288	293	Right-handed alpha
Helix 22	AC4	B	300	319	Right-handed alpha
Helix 23	AC5	B	322	352	Right-handed alpha
Helix 24	AC6	B	359	381	Right-handed alpha
Helix 25	AC7	C	14	26	Right-handed alpha
Helix 26	AC8	C	50	59	Right-handed alpha
Helix 27	AC9	C	61	68	Right-handed alpha
Helix 28	AD1	C	105	116	Right-handed alpha
Helix 29	AD2	C	160	167	Right-handed alpha
Helix 30	AD3	C	168	172	Right-handed 310
Helix 31	AD4	C	234	247	Right-handed alpha
Helix 32	AD5	C	252	261	Right-handed alpha
Helix 33	AD6	C	288	293	Right-handed alpha
Helix 34	AD7	C	300	320	Right-handed alpha
Helix 35	AD8	C	322	351	Right-handed alpha
Helix 36	AD9	C	361	378	Right-handed alpha
Helix 37	AE1	D	14	26	Right-handed alpha
Helix 38	AE2	D	50	59	Right-handed alpha
Helix 39	AE3	D	61	68	Right-handed alpha
Helix 40	AE4	D	105	116	Right-handed alpha
Helix 41	AE5	D	160	167	Right-handed alpha
Helix 42	AE6	D	168	172	Right-handed 310
Helix 43	AE7	D	235	247	Right-handed alpha
Helix 44	AE8	D	252	261	Right-handed alpha
Helix 45	AE9	D	288	293	Right-handed alpha
Helix 46	AF1	D	300	320	Right-handed alpha
Helix 47	AF2	D	322	351	Right-handed alpha
Helix 48	AF3	D	364	381	Right-handed alpha

There are 16 sheets in PDB entry 5TUK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	29	33	parallel
Strand 3	A	6	10	parallel
Strand 4	A	151	154	parallel
Strand 5	A	284	286	parallel
Strand 6	A	280	281	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	101	104	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	74	78	anti-parallel
Strand 3	A	195	201	parallel
Strand 4	A	204	210	anti-parallel
Strand 5	A	216	224	anti-parallel
Strand 6	A	173	187	anti-parallel
Strand 7	A	267	275	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	132	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	146	149	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	29	33	parallel
Strand 3	B	6	10	parallel
Strand 4	B	151	154	parallel
Strand 5	B	284	286	parallel
Strand 6	B	280	281	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	101	104	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	88	first strand
Strand 2	B	74	78	anti-parallel
Strand 3	B	195	201	parallel
Strand 4	B	204	210	anti-parallel
Strand 5	B	216	224	anti-parallel
Strand 6	B	173	187	anti-parallel
Strand 7	B	267	275	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	132	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	146	149	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	29	33	parallel
Strand 3	C	6	10	parallel
Strand 4	C	151	154	parallel
Strand 5	C	284	286	parallel
Strand 6	C	280	281	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	101	104	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	78	first strand
Strand 2	C	195	201	parallel
Strand 3	C	204	210	anti-parallel
Strand 4	C	216	224	anti-parallel
Strand 5	C	173	187	anti-parallel
Strand 6	C	267	275	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	146	149	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	122	first strand
Strand 2	D	29	33	parallel
Strand 3	D	6	10	parallel
Strand 4	D	151	154	parallel
Strand 5	D	284	286	parallel
Strand 6	D	280	281	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	101	104	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	74	78	anti-parallel
Strand 3	D	195	201	parallel
Strand 4	D	204	210	anti-parallel
Strand 5	D	216	224	anti-parallel
Strand 6	D	173	187	anti-parallel
Strand 7	D	267	275	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	132	first strand
Strand 2	D	137	141	anti-parallel
Strand 3	D	146	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TUK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TUK