Analysis of interatomic Contacts of Structural Units in PDB entry:
5TUL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TUL entry

There is 1 chain in PDB entry 5TUL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0TYR 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5TUL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
50 59Right-handed alpha
Helix 3
AA3
A
61 68Right-handed alpha
Helix 4
AA4
A
105 116Right-handed alpha
Helix 5
AA5
A
160 167Right-handed alpha
Helix 6
AA6
A
234 247Right-handed alpha
Helix 7
AA7
A
252 260Right-handed alpha
Helix 8
AA8
A
261 263Right-handed 310
Helix 9
AA9
A
288 293Right-handed alpha
Helix 10
AB1
A
300 319Right-handed alpha
Helix 11
AB2
A
321 351Right-handed alpha
Helix 12
AB3
A
358 378Right-handed alpha
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There are 4 sheets in PDB entry 5TUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
29 33parallel
Strand 3
A
6 10parallel
Strand 4
A
151 154parallel
Strand 5
A
284 286parallel
Strand 6
A
280 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
101 104anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
195 201parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
216 224anti-parallel
Strand 6
A
172 187anti-parallel
Strand 7
A
267 276anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 132first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
146 149anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il