Analysis of interatomic Contacts of Structural Units in PDB entry:
5TUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TUM entry

There are 2 chains in PDB entry 5TUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3SER 389
B
 LYS 3TYR 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5TUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
51 59Right-handed alpha
Helix 3
AA3
A
61 69Right-handed alpha
Helix 4
AA4
A
105 116Right-handed alpha
Helix 5
AA5
A
160 167Right-handed alpha
Helix 6
AA6
A
234 247Right-handed alpha
Helix 7
AA7
A
252 259Right-handed alpha
Helix 8
AA8
A
288 293Right-handed alpha
Helix 9
AA9
A
295 299Right-handed 310
Helix 10
AB1
A
300 319Right-handed alpha
Helix 11
AB2
A
322 352Right-handed alpha
Helix 12
AB3
A
364 367Right-handed 310
Helix 13
AB4
A
368 379Right-handed alpha
Helix 14
AB5
B
14 26Right-handed alpha
Helix 15
AB6
B
49 59Right-handed alpha
Helix 16
AB7
B
61 68Right-handed alpha
Helix 17
AB8
B
105 116Right-handed alpha
Helix 18
AB9
B
160 167Right-handed alpha
Helix 19
AC1
B
234 246Right-handed alpha
Helix 20
AC2
B
252 260Right-handed alpha
Helix 21
AC3
B
261 263Right-handed 310
Helix 22
AC4
B
288 293Right-handed alpha
Helix 23
AC5
B
300 320Right-handed alpha
Helix 24
AC6
B
322 352Right-handed alpha
Helix 25
AC7
B
367 379Right-handed alpha
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There are 8 sheets in PDB entry 5TUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
31 33parallel
Strand 3
A
7 10parallel
Strand 4
A
151 154parallel
Strand 5
A
284 286parallel
Strand 6
A
280 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
101 104anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
195 201parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
216 223anti-parallel
Strand 6
A
172 187anti-parallel
Strand 7
A
267 276anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 132first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
146 149anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
29 33parallel
Strand 3
B
6 10parallel
Strand 4
B
151 154parallel
Strand 5
B
284 286parallel
Strand 6
B
280 281anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
101 104anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
74 78anti-parallel
Strand 3
B
195 201parallel
Strand 4
B
204 209anti-parallel
Strand 5
B
217 223anti-parallel
Strand 6
B
172 186anti-parallel
Strand 7
B
267 276anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 132first strand
Strand 2
B
137 141anti-parallel
Strand 3
B
145 149anti-parallel
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