Analysis of interatomic Contacts of Structural Units in PDB entry:
5TUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TUV entry

There are 6 chains in PDB entry 5TUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 198MET 305
B
 LYS 124ASN 230
C
 SER 1000THR 1028
D
 GLU 208ALA 306
E
 GLU 125LYS 231
F
 ALA 1001GLY 1024
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5TUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
199 245Right-handed alpha
Helix 2
AA2
A
296 303Right-handed alpha
Helix 3
AA3
B
126 163Right-handed alpha
Helix 4
AA4
B
164 170Right-handed alpha
Helix 5
AA5
B
174 182Right-handed alpha
Helix 6
AA6
C
1010 1024Right-handed alpha
Helix 7
AA7
D
209 244Right-handed alpha
Helix 8
AA8
D
296 302Right-handed alpha
Helix 9
AA9
E
128 134Right-handed alpha
Helix 10
AB1
E
135 162Right-handed alpha
Helix 11
AB2
E
164 170Right-handed alpha
Helix 12
AB3
E
175 181Right-handed alpha
Helix 13
AB4
F
1011 1023Right-handed alpha
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There are 4 sheets in PDB entry 5TUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
B
172 173anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
261 266anti-parallel
Strand 3
B
186 191anti-parallel
Strand 4
B
224 229anti-parallel
Strand 5
D
272 276anti-parallel
Strand 6
D
282 287anti-parallel
Strand 7
E
213 218anti-parallel
Strand 8
E
197 200anti-parallel
Strand 9
F
1002 1005anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1001 1005first strand
Strand 2
B
197 201anti-parallel
Strand 3
B
213 218anti-parallel
Strand 4
A
283 287anti-parallel
Strand 5
A
272 276anti-parallel
Strand 6
E
224 230anti-parallel
Strand 7
E
186 191anti-parallel
Strand 8
D
262 266anti-parallel
Strand 9
D
291 295anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
256 258first strand
Strand 2
E
172 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il