Analysis of interatomic Contacts of Structural Units in PDB entry:
5TV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TV4 entry

There are 2 chains in PDB entry 5TV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11PHE 580
B
 GLN 11PHE 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5TV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
24 48Right-handed alpha
Helix 3
AA3
A
49 54Right-handed alpha
Helix 4
AA4
A
62 65Right-handed 310
Helix 5
AA5
A
66 110Right-handed alpha
Helix 6
AA6
A
112 117Right-handed 310
Helix 7
AA7
A
120 148Right-handed alpha
Helix 8
AA8
A
150 164Right-handed alpha
Helix 9
AA9
A
164 173Right-handed alpha
Helix 10
AB1
A
174 193Right-handed alpha
Helix 11
AB2
A
195 213Right-handed alpha
Helix 12
AB3
A
213 221Right-handed alpha
Helix 13
AB4
A
222 251Right-handed alpha
Helix 14
AB5
A
251 256Right-handed alpha
Helix 15
AB6
A
257 268Right-handed alpha
Helix 16
AB7
A
271 276Right-handed alpha
Helix 17
AB8
A
280 323Right-handed alpha
Helix 18
AB9
A
384 390Right-handed alpha
Helix 19
AC1
A
411 419Right-handed alpha
Helix 20
AC2
A
432 437Right-handed alpha
Helix 21
AC3
A
438 443Right-handed 310
Helix 22
AC4
A
447 456Right-handed alpha
Helix 23
AC5
A
459 465Right-handed alpha
Helix 24
AC6
A
468 472Right-handed 310
Helix 25
AC7
A
482 497Right-handed alpha
Helix 26
AC8
A
512 528Right-handed alpha
Helix 27
AC9
A
538 545Right-handed alpha
Helix 28
AD1
A
561 567Right-handed alpha
Helix 29
AD2
A
570 579Right-handed alpha
Helix 30
AD3
B
12 21Right-handed alpha
Helix 31
AD4
B
24 49Right-handed alpha
Helix 32
AD5
B
49 55Right-handed alpha
Helix 33
AD6
B
60 109Right-handed alpha
Helix 34
AD7
B
113 118Right-handed alpha
Helix 35
AD8
B
120 162Right-handed alpha
Helix 36
AD9
B
164 173Right-handed alpha
Helix 37
AE1
B
174 213Right-handed alpha
Helix 38
AE2
B
213 221Right-handed alpha
Helix 39
AE3
B
222 251Right-handed alpha
Helix 40
AE4
B
252 276Right-handed alpha
Helix 41
AE5
B
280 287Right-handed alpha
Helix 42
AE6
B
287 308Right-handed alpha
Helix 43
AE7
B
309 323Right-handed alpha
Helix 44
AE8
B
383 390Right-handed alpha
Helix 45
AE9
B
412 417Right-handed alpha
Helix 46
AF1
B
446 456Right-handed alpha
Helix 47
AF2
B
458 463Right-handed 310
Helix 48
AF3
B
482 497Right-handed alpha
Helix 49
AF4
B
512 527Right-handed alpha
Helix 50
AF5
B
540 545Right-handed alpha
Helix 51
AF6
B
561 567Right-handed alpha
Helix 52
AF7
B
570 579Right-handed alpha
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There are 5 sheets in PDB entry 5TV4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 367first strand
Strand 2
A
341 350anti-parallel
Strand 3
A
397 402anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 374first strand
Strand 2
A
532 535parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 552first strand
Strand 2
A
555 558anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 347first strand
Strand 2
B
362 364anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 421first strand
Strand 2
B
502 503parallel
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