Analysis of interatomic Contacts of Structural Units in PDB entry:
5TV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TV5 entry

There are 2 chains in PDB entry 5TV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LEU 240
B
 ASP 2LEU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5TV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 27Right-handed 310
Helix 2
AA2
A
28 39Right-handed alpha
Helix 3
AA3
A
72 86Right-handed alpha
Helix 4
AA4
A
90 104Right-handed alpha
Helix 5
AA5
A
143 154Right-handed alpha
Helix 6
AA6
A
157 173Right-handed alpha
Helix 7
AA7
A
220 222Right-handed 310
Helix 8
AA8
A
223 234Right-handed alpha
Helix 9
AA9
B
28 38Right-handed alpha
Helix 10
AB1
B
72 86Right-handed alpha
Helix 11
AB2
B
90 103Right-handed alpha
Helix 12
AB3
B
143 154Right-handed alpha
Helix 13
AB4
B
157 173Right-handed alpha
Helix 14
AB5
B
220 222Right-handed 310
Helix 15
AB6
B
223 233Right-handed alpha
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There are 6 sheets in PDB entry 5TV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 24first strand
Strand 2
A
4 12anti-parallel
Strand 3
A
45 52anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
236 239parallel
Strand 3
A
139 141parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
198 203parallel
Strand 3
A
190 194anti-parallel
Strand 4
A
177 181anti-parallel
Strand 5
A
214 219anti-parallel
Strand 6
A
116 119parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 25first strand
Strand 2
B
3 12anti-parallel
Strand 3
B
45 52anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
235 239parallel
Strand 3
B
139 141parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 68first strand
Strand 2
B
198 202parallel
Strand 3
B
190 194anti-parallel
Strand 4
B
177 181anti-parallel
Strand 5
B
214 219anti-parallel
Strand 6
B
115 119parallel
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