Analysis of interatomic Contacts of Structural Units in PDB entry:
5TV7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TV7 entry

There are 4 chains in PDB entry 5TV7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 43ASN 69
A
 GLU 71SER 200
B
 LEU 43ASN 69
B
 GLU 71SER 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5TV7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
59 73Right-handed alpha
Helix 3
AA3
A
95 99Right-handed 310
Helix 4
AA4
A
137 150Right-handed alpha
Helix 5
AA5
A
161 175Right-handed alpha
Helix 6
AA6
A
184 196Right-handed alpha
Helix 7
AA7
B
43 47Right-handed 310
Helix 8
AA8
B
59 73Right-handed alpha
Helix 9
AA9
B
137 150Right-handed alpha
Helix 10
AB1
B
161 175Right-handed alpha
Helix 11
AB2
B
184 196Right-handed alpha
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There are 2 sheets in PDB entry 5TV7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
100 109anti-parallel
Strand 4
A
114 118anti-parallel
Strand 5
A
122 126anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
48 54anti-parallel
Strand 3
B
100 109anti-parallel
Strand 4
B
114 118anti-parallel
Strand 5
B
122 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il