Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TVF entry

There are 4 chains in PDB entry 5TVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	GLU 85
B	SER 87	ALA 356
C	LYS 5	GLU 85
D	SER 87	GLU 297

There are 46 helices in PDB entry 5TVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	18	Right-handed alpha
Helix 2	AA2	A	48	53	Right-handed 310
Helix 3	AA3	A	54	65	Right-handed alpha
Helix 4	AA4	B	104	107	Right-handed 310
Helix 5	AA5	B	108	119	Right-handed alpha
Helix 6	AA6	B	135	139	Right-handed 310
Helix 7	AA7	B	140	144	Right-handed 310
Helix 8	AA8	B	145	157	Right-handed alpha
Helix 9	AA9	B	200	205	Right-handed alpha
Helix 10	AB1	B	206	208	Right-handed 310
Helix 11	AB2	B	216	227	Right-handed alpha
Helix 12	AB3	B	227	232	Right-handed alpha
Helix 13	AB4	B	266	269	Right-handed 310
Helix 14	AB5	B	283	295	Right-handed alpha
Helix 15	AB6	B	309	316	Right-handed alpha
Helix 16	AB7	B	324	328	Right-handed 310
Helix 17	AB8	C	6	20	Right-handed alpha
Helix 18	AB9	C	48	53	Right-handed 310
Helix 19	AC1	C	54	65	Right-handed alpha
Helix 20	AC2	D	104	107	Right-handed 310
Helix 21	AC3	D	108	119	Right-handed alpha
Helix 22	AC4	D	135	139	Right-handed 310
Helix 23	AC5	D	140	144	Right-handed 310
Helix 24	AC6	D	145	157	Right-handed alpha
Helix 25	AC7	D	200	205	Right-handed alpha
Helix 26	AC8	D	206	208	Right-handed 310
Helix 27	AC9	D	216	227	Right-handed alpha
Helix 28	AD1	D	227	232	Right-handed alpha
Helix 29	AD2	D	266	269	Right-handed 310
Helix 30	AD3	D	283	295	Right-handed alpha
Helix 31	AD4	D	309	317	Right-handed alpha
Helix 32	AD5	D	324	328	Right-handed 310
Helix 33	AD6	E	15	22	Right-handed alpha
Helix 34	AD7	E	55	65	Right-handed alpha
Helix 35	AD8	E	105	108	Right-handed 310
Helix 36	AD9	E	109	120	Right-handed alpha
Helix 37	AE1	E	143	159	Right-handed alpha
Helix 38	AE2	E	252	258	Right-handed alpha
Helix 39	AE3	E	258	271	Right-handed alpha
Helix 40	AE4	F	15	24	Right-handed alpha
Helix 41	AE5	F	55	65	Right-handed alpha
Helix 42	AE6	F	105	108	Right-handed 310
Helix 43	AE7	F	109	120	Right-handed alpha
Helix 44	AE8	F	143	159	Right-handed alpha
Helix 45	AE9	F	252	257	Right-handed alpha
Helix 46	AF1	F	258	271	Right-handed alpha

There are 7 sheets in PDB entry 5TVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	74	first strand
Strand 2	A	78	84	anti-parallel
Strand 3	B	88	91	anti-parallel
Strand 4	B	94	99	anti-parallel
Strand 5	A	33	41	anti-parallel
Strand 6	B	121	131	anti-parallel
Strand 7	B	173	179	anti-parallel
Strand 8	B	161	165	anti-parallel

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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	242	first strand
Strand 2	B	248	254	anti-parallel
Strand 3	B	257	264	anti-parallel
Strand 4	B	271	276	anti-parallel
Strand 5	B	190	197	anti-parallel
Strand 6	B	298	305	anti-parallel
Strand 7	B	345	354	anti-parallel
Strand 8	B	331	342	anti-parallel
Strand 9	F	300	310	anti-parallel
Strand 10	F	315	323	anti-parallel
Strand 11	F	274	281	anti-parallel
Strand 12	F	198	203	anti-parallel
Strand 13	F	245	250	anti-parallel
Strand 14	F	230	237	anti-parallel
Strand 15	F	220	227	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	78	84	anti-parallel
Strand 3	D	88	91	anti-parallel
Strand 4	D	94	99	anti-parallel
Strand 5	C	33	40	anti-parallel
Strand 6	D	122	131	anti-parallel
Strand 7	D	173	179	anti-parallel
Strand 8	D	161	165	anti-parallel

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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	237	242	anti-parallel
Strand 3	D	248	254	anti-parallel
Strand 4	D	257	264	anti-parallel
Strand 5	D	271	276	anti-parallel
Strand 6	D	190	197	anti-parallel
Strand 7	D	298	305	anti-parallel
Strand 8	D	345	354	anti-parallel
Strand 9	D	331	342	anti-parallel
Strand 10	E	300	310	anti-parallel
Strand 11	E	315	323	anti-parallel
Strand 12	E	274	281	anti-parallel
Strand 13	E	198	203	anti-parallel
Strand 14	E	245	250	anti-parallel
Strand 15	E	232	237	anti-parallel
Strand 16	E	220	224	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	11	first strand
Strand 2	F	5	11	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	76	first strand
Strand 2	E	79	84	anti-parallel
Strand 3	E	87	91	anti-parallel
Strand 4	E	95	100	anti-parallel
Strand 5	E	36	45	anti-parallel
Strand 6	E	124	133	anti-parallel
Strand 7	E	174	181	anti-parallel
Strand 8	E	163	167	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	76	first strand
Strand 2	F	79	84	anti-parallel
Strand 3	F	87	91	anti-parallel
Strand 4	F	95	100	anti-parallel
Strand 5	F	36	45	anti-parallel
Strand 6	F	124	133	anti-parallel
Strand 7	F	174	181	anti-parallel
Strand 8	F	163	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVF