Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TVG entry

There are 3 chains in PDB entry 5TVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -4	THR 463
B	HIS 0	GLN 464
C	MET 1	VAL 369

There are188 helices in PDB entry 5TVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed 310
Helix 2	AA2	A	22	36	Right-handed alpha
Helix 3	AA3	A	70	78	Right-handed alpha
Helix 4	AA4	A	80	85	Right-handed alpha
Helix 5	AA5	A	85	91	Right-handed alpha
Helix 6	AA6	A	100	120	Right-handed alpha
Helix 7	AA7	A	133	136	Right-handed 310
Helix 8	AA8	A	137	145	Right-handed alpha
Helix 9	AA9	A	161	166	Right-handed alpha
Helix 10	AB1	A	170	179	Right-handed alpha
Helix 11	AB2	A	188	202	Right-handed alpha
Helix 12	AB3	A	230	241	Right-handed alpha
Helix 13	AB4	A	244	255	Right-handed alpha
Helix 14	AB5	A	267	270	Right-handed 310
Helix 15	AB6	A	271	286	Right-handed alpha
Helix 16	AB7	A	287	290	Right-handed 310
Helix 17	AB8	A	306	328	Right-handed alpha
Helix 18	AB9	A	343	354	Right-handed alpha
Helix 19	AC1	A	367	377	Right-handed alpha
Helix 20	AC2	A	391	396	Right-handed 310
Helix 21	AC3	A	407	421	Right-handed alpha
Helix 22	AC4	A	422	440	Right-handed alpha
Helix 23	AC5	A	441	454	Right-handed alpha
Helix 24	AC6	A	455	461	Right-handed alpha
Helix 25	AC7	B	23	36	Right-handed alpha
Helix 26	AC8	B	71	78	Right-handed alpha
Helix 27	AC9	B	80	85	Right-handed alpha
Helix 28	AD1	B	85	91	Right-handed alpha
Helix 29	AD2	B	93	97	Right-handed 310
Helix 30	AD3	B	100	120	Right-handed alpha
Helix 31	AD4	B	133	136	Right-handed 310
Helix 32	AD5	B	137	145	Right-handed alpha
Helix 33	AD6	B	161	166	Right-handed alpha
Helix 34	AD7	B	170	179	Right-handed alpha
Helix 35	AD8	B	188	202	Right-handed alpha
Helix 36	AD9	B	230	241	Right-handed alpha
Helix 37	AE1	B	244	255	Right-handed alpha
Helix 38	AE2	B	267	270	Right-handed 310
Helix 39	AE3	B	271	286	Right-handed alpha
Helix 40	AE4	B	287	290	Right-handed 310
Helix 41	AE5	B	306	328	Right-handed alpha
Helix 42	AE6	B	343	354	Right-handed alpha
Helix 43	AE7	B	367	377	Right-handed alpha
Helix 44	AE8	B	391	396	Right-handed 310
Helix 45	AE9	B	407	421	Right-handed alpha
Helix 46	AF1	B	422	440	Right-handed alpha
Helix 47	AF2	B	441	461	Right-handed alpha
Helix 48	AF3	C	22	36	Right-handed alpha
Helix 49	AF4	C	70	78	Right-handed alpha
Helix 50	AF5	C	80	85	Right-handed alpha
Helix 51	AF6	C	85	91	Right-handed alpha
Helix 52	AF7	C	93	97	Right-handed 310
Helix 53	AF8	C	100	120	Right-handed alpha
Helix 54	AF9	C	133	136	Right-handed 310
Helix 55	AG1	C	137	145	Right-handed alpha
Helix 56	AG2	C	161	166	Right-handed alpha
Helix 57	AG3	C	170	179	Right-handed alpha
Helix 58	AG4	C	188	202	Right-handed alpha
Helix 59	AG5	C	230	241	Right-handed alpha
Helix 60	AG6	C	244	255	Right-handed alpha
Helix 61	AG7	C	267	270	Right-handed 310
Helix 62	AG8	C	271	286	Right-handed alpha
Helix 63	AG9	C	287	290	Right-handed 310
Helix 64	AH1	C	306	328	Right-handed alpha
Helix 65	AH2	C	343	354	Right-handed alpha
Helix 66	AH3	C	367	377	Right-handed alpha
Helix 67	AH4	C	391	396	Right-handed 310
Helix 68	AH5	C	407	421	Right-handed alpha
Helix 69	AH6	C	422	440	Right-handed alpha
Helix 70	AH7	C	441	456	Right-handed alpha
Helix 71	AH8	C	461	466	Right-handed alpha
Helix 72	AH9	D	13	18	Right-handed 310
Helix 73	AI1	D	22	36	Right-handed alpha
Helix 74	AI2	D	70	78	Right-handed alpha
Helix 75	AI3	D	80	85	Right-handed alpha
Helix 76	AI4	D	85	91	Right-handed alpha
Helix 77	AI5	D	93	97	Right-handed 310
Helix 78	AI6	D	100	120	Right-handed alpha
Helix 79	AI7	D	133	136	Right-handed 310
Helix 80	AI8	D	137	145	Right-handed alpha
Helix 81	AI9	D	161	166	Right-handed alpha
Helix 82	AJ1	D	170	179	Right-handed alpha
Helix 83	AJ2	D	188	202	Right-handed alpha
Helix 84	AJ3	D	230	241	Right-handed alpha
Helix 85	AJ4	D	244	255	Right-handed alpha
Helix 86	AJ5	D	267	270	Right-handed 310
Helix 87	AJ6	D	271	286	Right-handed alpha
Helix 88	AJ7	D	287	290	Right-handed 310
Helix 89	AJ8	D	306	328	Right-handed alpha
Helix 90	AJ9	D	343	354	Right-handed alpha
Helix 91	AK1	D	367	377	Right-handed alpha
Helix 92	AK2	D	391	396	Right-handed 310
Helix 93	AK3	D	407	420	Right-handed alpha
Helix 94	AK4	D	422	440	Right-handed alpha
Helix 95	AK5	D	441	456	Right-handed alpha
Helix 96	AK6	E	22	36	Right-handed alpha
Helix 97	AK7	E	70	78	Right-handed alpha
Helix 98	AK8	E	80	85	Right-handed alpha
Helix 99	AK9	E	85	91	Right-handed alpha
Helix 100	AL1	E	93	97	Right-handed 310
Helix 101	AL2	E	100	120	Right-handed alpha
Helix 102	AL3	E	133	136	Right-handed 310
Helix 103	AL4	E	137	145	Right-handed alpha
Helix 104	AL5	E	161	166	Right-handed alpha
Helix 105	AL6	E	170	179	Right-handed alpha
Helix 106	AL7	E	188	202	Right-handed alpha
Helix 107	AL8	E	230	241	Right-handed alpha
Helix 108	AL9	E	244	255	Right-handed alpha
Helix 109	AM1	E	267	270	Right-handed 310
Helix 110	AM2	E	271	286	Right-handed alpha
Helix 111	AM3	E	287	290	Right-handed 310
Helix 112	AM4	E	306	328	Right-handed alpha
Helix 113	AM5	E	343	354	Right-handed alpha
Helix 114	AM6	E	367	377	Right-handed alpha
Helix 115	AM7	E	391	396	Right-handed 310
Helix 116	AM8	E	407	421	Right-handed alpha
Helix 117	AM9	E	422	440	Right-handed alpha
Helix 118	AN1	E	441	456	Right-handed alpha
Helix 119	AN2	F	13	18	Right-handed 310
Helix 120	AN3	F	22	36	Right-handed alpha
Helix 121	AN4	F	70	78	Right-handed alpha
Helix 122	AN5	F	80	85	Right-handed alpha
Helix 123	AN6	F	85	91	Right-handed alpha
Helix 124	AN7	F	92	97	Right-handed 310
Helix 125	AN8	F	100	120	Right-handed alpha
Helix 126	AN9	F	133	136	Right-handed 310
Helix 127	AO1	F	137	145	Right-handed alpha
Helix 128	AO2	F	161	166	Right-handed alpha
Helix 129	AO3	F	170	179	Right-handed alpha
Helix 130	AO4	F	188	202	Right-handed alpha
Helix 131	AO5	F	230	241	Right-handed alpha
Helix 132	AO6	F	244	255	Right-handed alpha
Helix 133	AO7	F	267	270	Right-handed 310
Helix 134	AO8	F	271	286	Right-handed alpha
Helix 135	AO9	F	287	290	Right-handed 310
Helix 136	AP1	F	306	328	Right-handed alpha
Helix 137	AP2	F	343	354	Right-handed alpha
Helix 138	AP3	F	367	377	Right-handed alpha
Helix 139	AP4	F	391	396	Right-handed 310
Helix 140	AP5	F	407	421	Right-handed alpha
Helix 141	AP6	F	422	440	Right-handed alpha
Helix 142	AP7	F	441	459	Right-handed alpha
Helix 143	AP8	G	22	36	Right-handed alpha
Helix 144	AP9	G	70	78	Right-handed alpha
Helix 145	AQ1	G	80	85	Right-handed alpha
Helix 146	AQ2	G	85	91	Right-handed alpha
Helix 147	AQ3	G	92	97	Right-handed 310
Helix 148	AQ4	G	100	120	Right-handed alpha
Helix 149	AQ5	G	133	136	Right-handed 310
Helix 150	AQ6	G	137	145	Right-handed alpha
Helix 151	AQ7	G	161	166	Right-handed alpha
Helix 152	AQ8	G	170	179	Right-handed alpha
Helix 153	AQ9	G	188	202	Right-handed alpha
Helix 154	AR1	G	230	241	Right-handed alpha
Helix 155	AR2	G	244	255	Right-handed alpha
Helix 156	AR3	G	267	270	Right-handed 310
Helix 157	AR4	G	271	286	Right-handed alpha
Helix 158	AR5	G	287	290	Right-handed 310
Helix 159	AR6	G	306	328	Right-handed alpha
Helix 160	AR7	G	343	354	Right-handed alpha
Helix 161	AR8	G	367	377	Right-handed alpha
Helix 162	AR9	G	391	396	Right-handed 310
Helix 163	AS1	G	407	421	Right-handed alpha
Helix 164	AS2	G	422	440	Right-handed alpha
Helix 165	AS3	G	441	456	Right-handed alpha
Helix 166	AS4	H	25	36	Right-handed alpha
Helix 167	AS5	H	70	78	Right-handed alpha
Helix 168	AS6	H	80	85	Right-handed alpha
Helix 169	AS7	H	85	91	Right-handed alpha
Helix 170	AS8	H	93	97	Right-handed 310
Helix 171	AS9	H	100	120	Right-handed alpha
Helix 172	AT1	H	133	136	Right-handed 310
Helix 173	AT2	H	137	145	Right-handed alpha
Helix 174	AT3	H	161	166	Right-handed alpha
Helix 175	AT4	H	170	179	Right-handed alpha
Helix 176	AT5	H	188	202	Right-handed alpha
Helix 177	AT6	H	230	241	Right-handed alpha
Helix 178	AT7	H	244	255	Right-handed alpha
Helix 179	AT8	H	267	270	Right-handed 310
Helix 180	AT9	H	271	286	Right-handed alpha
Helix 181	AU1	H	287	290	Right-handed 310
Helix 182	AU2	H	306	328	Right-handed alpha
Helix 183	AU3	H	343	354	Right-handed alpha
Helix 184	AU4	H	367	377	Right-handed alpha
Helix 185	AU5	H	391	396	Right-handed 310
Helix 186	AU6	H	407	421	Right-handed alpha
Helix 187	AU7	H	422	440	Right-handed alpha
Helix 188	AU8	H	441	458	Right-handed alpha

There are 16 sheets in PDB entry 5TVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	62	69	anti-parallel
Strand 3	A	38	46	parallel
Strand 4	A	4	10	parallel
Strand 5	A	127	131	parallel
Strand 6	A	151	154	parallel
Strand 7	A	183	186	parallel
Strand 8	A	218	224	parallel
Strand 9	A	212	215	anti-parallel
Strand 10	A	205	208	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	293	298	parallel
Strand 3	A	258	263	parallel
Strand 4	A	356	359	parallel
Strand 5	A	384	388	parallel
Strand 6	A	401	403	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	59	first strand
Strand 2	B	62	70	anti-parallel
Strand 3	B	38	47	parallel
Strand 4	B	4	10	parallel
Strand 5	B	127	131	parallel
Strand 6	B	151	154	parallel
Strand 7	B	183	186	parallel
Strand 8	B	218	224	parallel
Strand 9	B	212	215	anti-parallel
Strand 10	B	205	207	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	338	first strand
Strand 2	B	293	298	parallel
Strand 3	B	258	263	parallel
Strand 4	B	356	359	parallel
Strand 5	B	384	388	parallel
Strand 6	B	401	403	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	59	first strand
Strand 2	C	62	69	anti-parallel
Strand 3	C	38	46	parallel
Strand 4	C	4	10	parallel
Strand 5	C	127	131	parallel
Strand 6	C	151	154	parallel
Strand 7	C	183	186	parallel
Strand 8	C	218	224	parallel
Strand 9	C	212	215	anti-parallel
Strand 10	C	205	206	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	338	first strand
Strand 2	C	293	298	parallel
Strand 3	C	258	263	parallel
Strand 4	C	356	359	parallel
Strand 5	C	384	388	parallel
Strand 6	C	401	403	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	59	first strand
Strand 2	D	62	69	anti-parallel
Strand 3	D	38	46	parallel
Strand 4	D	4	10	parallel
Strand 5	D	127	131	parallel
Strand 6	D	151	154	parallel
Strand 7	D	183	186	parallel
Strand 8	D	218	224	parallel
Strand 9	D	212	215	anti-parallel
Strand 10	D	205	206	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	338	first strand
Strand 2	D	293	298	parallel
Strand 3	D	258	263	parallel
Strand 4	D	356	359	parallel
Strand 5	D	384	388	parallel
Strand 6	D	401	403	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	59	first strand
Strand 2	E	62	69	anti-parallel
Strand 3	E	38	46	parallel
Strand 4	E	4	10	parallel
Strand 5	E	127	131	parallel
Strand 6	E	151	154	parallel
Strand 7	E	183	186	parallel
Strand 8	E	218	224	parallel
Strand 9	E	213	215	anti-parallel
Strand 10	E	205	206	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	335	338	first strand
Strand 2	E	293	298	parallel
Strand 3	E	258	263	parallel
Strand 4	E	356	359	parallel
Strand 5	E	384	388	parallel
Strand 6	E	401	403	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	59	first strand
Strand 2	F	62	69	anti-parallel
Strand 3	F	38	46	parallel
Strand 4	F	4	10	parallel
Strand 5	F	127	131	parallel
Strand 6	F	151	154	parallel
Strand 7	F	183	186	parallel
Strand 8	F	218	224	parallel
Strand 9	F	213	215	anti-parallel
Strand 10	F	205	206	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	335	338	first strand
Strand 2	F	293	298	parallel
Strand 3	F	258	263	parallel
Strand 4	F	356	359	parallel
Strand 5	F	384	388	parallel
Strand 6	F	401	403	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	59	first strand
Strand 2	G	62	67	anti-parallel
Strand 3	G	38	42	parallel
Strand 4	G	4	10	parallel
Strand 5	G	127	131	parallel
Strand 6	G	151	154	parallel
Strand 7	G	183	186	parallel
Strand 8	G	218	224	parallel
Strand 9	G	212	215	anti-parallel
Strand 10	G	205	206	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	335	338	first strand
Strand 2	G	293	298	parallel
Strand 3	G	258	263	parallel
Strand 4	G	356	359	parallel
Strand 5	G	384	388	parallel
Strand 6	G	401	403	parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	59	first strand
Strand 2	H	62	69	anti-parallel
Strand 3	H	38	46	parallel
Strand 4	H	4	8	parallel
Strand 5	H	127	131	parallel
Strand 6	H	151	154	parallel
Strand 7	H	183	186	parallel
Strand 8	H	218	224	parallel
Strand 9	H	212	215	anti-parallel
Strand 10	H	205	207	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	335	338	first strand
Strand 2	H	293	298	parallel
Strand 3	H	258	263	parallel
Strand 4	H	356	359	parallel
Strand 5	H	384	388	parallel
Strand 6	H	401	403	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVG