Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TVO entry

There are 2 chains in PDB entry 5TVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 402ALA 671
B
 SER 27GLU 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5TVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
419 422Right-handed 310
Helix 2
AA2
A
423 434Right-handed alpha
Helix 3
AA3
A
460 471Right-handed alpha
Helix 4
AA4
A
515 520Right-handed alpha
Helix 5
AA5
A
521 523Right-handed 310
Helix 6
AA6
A
531 542Right-handed alpha
Helix 7
AA7
A
542 547Right-handed alpha
Helix 8
AA8
A
598 610Right-handed alpha
Helix 9
AA9
A
624 632Right-handed alpha
Helix 10
AB1
A
639 643Right-handed 310
Helix 11
AB2
B
48 53Right-handed 310
Helix 12
AB3
B
54 64Right-handed alpha
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There are 2 sheets in PDB entry 5TVO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 482first strand
Strand 2
A
487 491anti-parallel
Strand 3
A
437 444anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
A
409 415anti-parallel
Strand 6
A
402 406anti-parallel
Strand 7
B
79 84anti-parallel
Strand 8
B
68 74anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 529first strand
Strand 2
A
552 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
572 579anti-parallel
Strand 5
A
586 591anti-parallel
Strand 6
A
507 512anti-parallel
Strand 7
A
613 619anti-parallel
Strand 8
A
660 669anti-parallel
Strand 9
A
646 657anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il