Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TVP entry

There are 10 chains in PDB entry 5TVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	SER 121	VAL 369
J	C 2	G 10
O	SER 121	VAL 369
P	C 2	G 10
Q	GLU 13	GLN 88
E	SER 121	LEU 370
F	C 2	G 10
G	SER 121	VAL 369
H	C 2	G 10
B	GLY 117	PRO 210

There are 55 helices in PDB entry 5TVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	138	154	Right-handed alpha
Helix 2	AA2	I	164	175	Right-handed alpha
Helix 3	AA3	I	240	242	Right-handed 310
Helix 4	AA4	I	243	261	Right-handed alpha
Helix 5	AA5	I	278	283	Right-handed alpha
Helix 6	AA6	I	293	297	Right-handed alpha
Helix 7	AA7	I	300	304	Right-handed 310
Helix 8	AA8	O	138	154	Right-handed alpha
Helix 9	AA9	O	164	175	Right-handed alpha
Helix 10	AB1	O	240	242	Right-handed 310
Helix 11	AB2	O	243	260	Right-handed alpha
Helix 12	AB3	O	276	282	Right-handed alpha
Helix 13	AB4	O	293	297	Right-handed alpha
Helix 14	AB5	O	300	304	Right-handed 310
Helix 15	AB6	Q	40	52	Right-handed alpha
Helix 16	AB7	E	138	154	Right-handed alpha
Helix 17	AB8	E	164	175	Right-handed alpha
Helix 18	AB9	E	240	242	Right-handed 310
Helix 19	AC1	E	243	261	Right-handed alpha
Helix 20	AC2	E	276	283	Right-handed alpha
Helix 21	AC3	E	293	297	Right-handed alpha
Helix 22	AC4	E	300	304	Right-handed 310
Helix 23	AC5	G	138	154	Right-handed alpha
Helix 24	AC6	G	164	175	Right-handed alpha
Helix 25	AC7	G	240	242	Right-handed 310
Helix 26	AC8	G	243	261	Right-handed alpha
Helix 27	AC9	G	278	283	Right-handed alpha
Helix 28	AD1	G	293	297	Right-handed alpha
Helix 29	AD2	G	300	304	Right-handed 310
Helix 30	AD3	B	138	154	Right-handed alpha
Helix 31	AD4	B	164	175	Right-handed alpha
Helix 32	AD5	B	240	242	Right-handed 310
Helix 33	AD6	B	243	261	Right-handed alpha
Helix 34	AD7	B	276	284	Right-handed alpha
Helix 35	AD8	B	293	297	Right-handed alpha
Helix 36	AD9	B	300	304	Right-handed 310
Helix 37	AE1	A	138	154	Right-handed alpha
Helix 38	AE2	A	164	175	Right-handed alpha
Helix 39	AE3	A	240	242	Right-handed 310
Helix 40	AE4	A	243	261	Right-handed alpha
Helix 41	AE5	A	276	283	Right-handed alpha
Helix 42	AE6	A	293	297	Right-handed alpha
Helix 43	AE7	A	300	304	Right-handed 310
Helix 44	AE8	K	138	154	Right-handed alpha
Helix 45	AE9	K	164	175	Right-handed alpha
Helix 46	AF1	K	243	261	Right-handed alpha
Helix 47	AF2	K	278	283	Right-handed alpha
Helix 48	AF3	K	293	297	Right-handed alpha
Helix 49	AF4	K	300	304	Right-handed 310
Helix 50	AF5	M	138	154	Right-handed alpha
Helix 51	AF6	M	164	175	Right-handed alpha
Helix 52	AF7	M	243	261	Right-handed alpha
Helix 53	AF8	M	278	283	Right-handed alpha
Helix 54	AF9	M	293	297	Right-handed alpha
Helix 55	AG1	M	300	304	Right-handed 310

There are 23 sheets in PDB entry 5TVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	178	182	first strand
Strand 2	I	189	195	anti-parallel
Strand 3	I	157	163	anti-parallel
Strand 4	I	123	130	parallel
Strand 5	I	361	368	anti-parallel
Strand 6	I	337	345	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	199	208	first strand
Strand 2	I	217	225	anti-parallel
Strand 3	I	228	235	anti-parallel
Strand 4	I	266	272	parallel
Strand 5	I	326	331	anti-parallel
Strand 6	I	290	292	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	178	182	first strand
Strand 2	O	189	195	anti-parallel
Strand 3	O	157	163	anti-parallel
Strand 4	O	123	130	parallel
Strand 5	O	361	368	anti-parallel
Strand 6	O	337	345	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	199	208	first strand
Strand 2	O	217	225	anti-parallel
Strand 3	O	228	235	anti-parallel
Strand 4	O	266	272	parallel
Strand 5	O	326	331	anti-parallel
Strand 6	O	290	292	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	307	308	first strand
Strand 2	O	322	323	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	65	66	first strand
Strand 2	Q	59	62	anti-parallel
Strand 3	Q	82	87	anti-parallel
Strand 4	Q	17	24	parallel
Strand 5	Q	29	35	anti-parallel
Strand 6	B	118	120	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	182	first strand
Strand 2	E	189	195	anti-parallel
Strand 3	E	157	163	anti-parallel
Strand 4	E	123	130	parallel
Strand 5	E	361	368	anti-parallel
Strand 6	E	337	345	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	208	first strand
Strand 2	E	217	225	anti-parallel
Strand 3	E	228	235	anti-parallel
Strand 4	E	266	272	parallel
Strand 5	E	326	331	anti-parallel
Strand 6	E	291	292	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	308	first strand
Strand 2	E	322	323	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	182	first strand
Strand 2	G	189	195	anti-parallel
Strand 3	G	157	163	anti-parallel
Strand 4	G	123	130	parallel
Strand 5	G	361	368	anti-parallel
Strand 6	G	337	345	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	208	first strand
Strand 2	G	217	225	anti-parallel
Strand 3	G	228	235	anti-parallel
Strand 4	G	266	272	parallel
Strand 5	G	326	331	anti-parallel
Strand 6	G	291	292	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	308	first strand
Strand 2	G	322	323	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	189	195	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	123	130	parallel
Strand 5	B	361	368	anti-parallel
Strand 6	B	337	345	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	208	first strand
Strand 2	B	217	225	anti-parallel
Strand 3	B	228	235	anti-parallel
Strand 4	B	266	272	parallel
Strand 5	B	326	331	anti-parallel
Strand 6	B	291	292	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	322	323	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	157	163	anti-parallel
Strand 4	A	123	130	parallel
Strand 5	A	361	368	anti-parallel
Strand 6	A	337	345	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	208	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	228	235	anti-parallel
Strand 4	A	266	272	parallel
Strand 5	A	326	331	anti-parallel
Strand 6	A	290	292	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	322	323	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	178	182	first strand
Strand 2	K	189	195	anti-parallel
Strand 3	K	157	163	anti-parallel
Strand 4	K	123	130	parallel
Strand 5	K	361	368	anti-parallel
Strand 6	K	337	345	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	199	208	first strand
Strand 2	K	217	225	anti-parallel
Strand 3	K	228	235	anti-parallel
Strand 4	K	266	272	parallel
Strand 5	K	326	331	anti-parallel
Strand 6	K	290	292	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	307	308	first strand
Strand 2	K	322	323	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	178	182	first strand
Strand 2	M	189	195	anti-parallel
Strand 3	M	157	163	anti-parallel
Strand 4	M	123	130	parallel
Strand 5	M	361	369	anti-parallel
Strand 6	M	336	345	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	199	208	first strand
Strand 2	M	217	225	anti-parallel
Strand 3	M	228	235	anti-parallel
Strand 4	M	266	272	parallel
Strand 5	M	326	331	anti-parallel
Strand 6	M	290	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVP