Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TVS entry

There are 2 chains in PDB entry 5TVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6PHE 353
B
 GLU 6PHE 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5TVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
38 42Right-handed 310
Helix 4
AA4
A
94 103Right-handed alpha
Helix 5
AA5
A
113 125Right-handed alpha
Helix 6
AA6
A
155 160Right-handed 310
Helix 7
AA7
A
190 194Right-handed 310
Helix 8
AA8
A
212 214Right-handed 310
Helix 9
AA9
A
215 227Right-handed alpha
Helix 10
AB1
A
227 234Right-handed alpha
Helix 11
AB2
A
236 241Right-handed 310
Helix 12
AB3
A
246 253Right-handed alpha
Helix 13
AB4
A
295 303Right-handed alpha
Helix 14
AB5
A
317 325Right-handed alpha
Helix 15
AB6
A
328 334Right-handed alpha
Helix 16
AB7
A
347 352Right-handed 310
Helix 17
AB8
B
20 26Right-handed alpha
Helix 18
AB9
B
26 36Right-handed alpha
Helix 19
AC1
B
37 42Right-handed 310
Helix 20
AC2
B
94 103Right-handed alpha
Helix 21
AC3
B
113 125Right-handed alpha
Helix 22
AC4
B
155 159Right-handed 310
Helix 23
AC5
B
190 194Right-handed 310
Helix 24
AC6
B
212 227Right-handed alpha
Helix 25
AC7
B
227 234Right-handed alpha
Helix 26
AC8
B
236 241Right-handed 310
Helix 27
AC9
B
246 253Right-handed alpha
Helix 28
AD1
B
295 303Right-handed alpha
Helix 29
AD2
B
317 325Right-handed alpha
Helix 30
AD3
B
328 334Right-handed alpha
Helix 31
AD4
B
347 353Right-handed 310
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There are 6 sheets in PDB entry 5TVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
44 47parallel
Strand 3
A
267 270anti-parallel
Strand 4
A
195 203anti-parallel
Strand 5
A
284 291anti-parallel
Strand 6
A
175 179anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
A
71 78anti-parallel
Strand 9
A
81 88anti-parallel
Strand 10
A
243 245anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
92 93anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
258 262anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
44 47parallel
Strand 3
B
267 270anti-parallel
Strand 4
B
195 203anti-parallel
Strand 5
B
284 291anti-parallel
Strand 6
B
175 179anti-parallel
Strand 7
B
131 137anti-parallel
Strand 8
B
71 78anti-parallel
Strand 9
B
81 88anti-parallel
Strand 10
B
243 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
92 93anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 188first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
206 211anti-parallel
Strand 4
B
258 262anti-parallel
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