Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TVV entry

There are 3 chains in PDB entry 5TVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 185
B
 MET 1TRP 185
C
 SER 2TRP 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5TVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 156Right-handed alpha
Helix 2
AA2
B
146 156Right-handed alpha
Helix 3
AA3
C
146 155Right-handed alpha
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There are 7 sheets in PDB entry 5TVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 100first strand
Strand 2
A
103 117anti-parallel
Strand 3
A
120 132anti-parallel
Strand 4
A
77 85parallel
Strand 5
A
50 73anti-parallel
Strand 6
A
163 185anti-parallel
Strand 7
A
35 42anti-parallel
Strand 8
A
5 10anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
103 117anti-parallel
Strand 11
B
120 132anti-parallel
Strand 12
B
77 85parallel
Strand 13
B
50 73anti-parallel
Strand 14
B
163 185anti-parallel
Strand 15
B
35 42anti-parallel
Strand 16
B
5 10anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
163 185anti-parallel
Strand 4
A
35 42anti-parallel
Strand 5
A
5 10anti-parallel
Strand 6
B
92 100anti-parallel
Strand 7
B
103 117anti-parallel
Strand 8
B
120 132anti-parallel
Strand 9
B
77 85parallel
Strand 10
B
50 73anti-parallel
Strand 11
B
142 145anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
163 185anti-parallel
Strand 4
A
50 73anti-parallel
Strand 5
A
142 145anti-parallel
Strand 6
A
50 73anti-parallel
Strand 7
A
77 85anti-parallel
Strand 8
A
120 132parallel
Strand 9
A
103 117anti-parallel
Strand 10
A
93 100anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
163 185anti-parallel
Strand 4
B
25 31anti-parallel
Strand 5
B
15 20anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
25 31anti-parallel
Strand 3
B
163 185anti-parallel
Strand 4
B
50 73anti-parallel
Strand 5
B
142 145anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 10first strand
Strand 2
C
35 42anti-parallel
Strand 3
C
163 185anti-parallel
Strand 4
C
50 73anti-parallel
Strand 5
C
77 85anti-parallel
Strand 6
C
123 132parallel
Strand 7
C
103 115anti-parallel
Strand 8
C
93 100anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 20first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
163 185anti-parallel
Strand 4
C
50 73anti-parallel
Strand 5
C
142 145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il