Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TVW entry

There are 2 chains in PDB entry 5TVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 85	GLU 717
B	THR 85	GLU 717

There are 52 helices in PDB entry 5TVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	108	119	Right-handed alpha
Helix 2	AA2	A	125	150	Right-handed alpha
Helix 3	AA3	A	179	188	Right-handed alpha
Helix 4	AA4	A	193	202	Right-handed alpha
Helix 5	AA5	A	206	211	Right-handed 310
Helix 6	AA6	A	218	221	Right-handed 310
Helix 7	AA7	A	222	226	Right-handed alpha
Helix 8	AA8	A	274	280	Right-handed 310
Helix 9	AA9	A	281	293	Right-handed alpha
Helix 10	AB1	A	312	316	Right-handed 310
Helix 11	AB2	A	322	335	Right-handed alpha
Helix 12	AB3	A	396	400	Right-handed 310
Helix 13	AB4	A	423	448	Right-handed alpha
Helix 14	AB5	A	448	470	Right-handed alpha
Helix 15	AB6	A	472	481	Right-handed alpha
Helix 16	AB7	A	498	503	Right-handed alpha
Helix 17	AB8	A	519	525	Right-handed alpha
Helix 18	AB9	A	526	535	Right-handed alpha
Helix 19	AC1	A	546	555	Right-handed alpha
Helix 20	AC2	A	593	605	Right-handed alpha
Helix 21	AC3	A	629	637	Right-handed alpha
Helix 22	AC4	A	663	676	Right-handed alpha
Helix 23	AC5	A	676	695	Right-handed alpha
Helix 24	AC6	A	701	703	Right-handed 310
Helix 25	AC7	A	704	716	Right-handed alpha
Helix 26	AC8	B	108	119	Right-handed alpha
Helix 27	AC9	B	123	125	Right-handed 310
Helix 28	AD1	B	126	146	Right-handed alpha
Helix 29	AD2	B	179	188	Right-handed alpha
Helix 30	AD3	B	193	198	Right-handed alpha
Helix 31	AD4	B	218	225	Right-handed 310
Helix 32	AD5	B	274	280	Right-handed 310
Helix 33	AD6	B	281	293	Right-handed alpha
Helix 34	AD7	B	312	316	Right-handed 310
Helix 35	AD8	B	317	321	Right-handed 310
Helix 36	AD9	B	322	335	Right-handed alpha
Helix 37	AE1	B	366	372	Right-handed alpha
Helix 38	AE2	B	396	400	Right-handed 310
Helix 39	AE3	B	422	448	Right-handed alpha
Helix 40	AE4	B	448	470	Right-handed alpha
Helix 41	AE5	B	472	481	Right-handed alpha
Helix 42	AE6	B	497	505	Right-handed alpha
Helix 43	AE7	B	519	525	Right-handed alpha
Helix 44	AE8	B	526	534	Right-handed alpha
Helix 45	AE9	B	546	555	Right-handed alpha
Helix 46	AF1	B	565	574	Right-handed alpha
Helix 47	AF2	B	584	588	Right-handed 310
Helix 48	AF3	B	590	605	Right-handed alpha
Helix 49	AF4	B	629	637	Right-handed alpha
Helix 50	AF5	B	663	676	Right-handed alpha
Helix 51	AF6	B	676	695	Right-handed alpha
Helix 52	AF7	B	701	716	Right-handed alpha

There are 11 sheets in PDB entry 5TVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	B	253	260	anti-parallel
Strand 3	A	101	104	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	B	253	260	anti-parallel
Strand 3	B	243	248	anti-parallel
Strand 4	B	227	235	anti-parallel
Strand 5	B	265	272	anti-parallel
Strand 6	B	168	173	anti-parallel
Strand 7	B	158	163	anti-parallel
Strand 8	B	300	302	parallel
Strand 9	B	305	306	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	B	189	190	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	306	first strand
Strand 2	A	300	302	anti-parallel
Strand 3	A	158	163	parallel
Strand 4	A	168	173	anti-parallel
Strand 5	A	265	272	anti-parallel
Strand 6	A	227	235	anti-parallel
Strand 7	A	243	248	anti-parallel
Strand 8	A	253	260	anti-parallel
Strand 9	B	95	104	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	B	106	107	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	348	first strand
Strand 2	A	354	361	anti-parallel
Strand 3	A	403	407	anti-parallel
Strand 4	A	379	382	parallel
Strand 5	A	385	388	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	539	542	anti-parallel
Strand 3	A	512	516	parallel
Strand 4	A	560	564	parallel
Strand 5	A	556	557	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	614	first strand
Strand 2	A	655	659	parallel
Strand 3	A	623	627	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	348	first strand
Strand 2	B	354	361	anti-parallel
Strand 3	B	403	407	anti-parallel
Strand 4	B	378	382	parallel
Strand 5	B	385	386	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	539	542	anti-parallel
Strand 3	B	511	516	parallel
Strand 4	B	560	564	parallel
Strand 5	B	556	557	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	614	first strand
Strand 2	B	656	659	parallel
Strand 3	B	623	626	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVW