Analysis of interatomic Contacts of Structural Units in PDB entry:
5TVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TVX entry

There are 2 chains in PDB entry 5TVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 85GLU 717
A
 THR 85GLU 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5TVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
108 119Right-handed alpha
Helix 2
AA2
B
123 125Right-handed 310
Helix 3
AA3
B
126 146Right-handed alpha
Helix 4
AA4
B
179 187Right-handed alpha
Helix 5
AA5
B
193 198Right-handed alpha
Helix 6
AA6
B
218 225Right-handed 310
Helix 7
AA7
B
274 280Right-handed 310
Helix 8
AA8
B
281 293Right-handed alpha
Helix 9
AA9
B
312 316Right-handed 310
Helix 10
AB1
B
317 321Right-handed 310
Helix 11
AB2
B
322 334Right-handed alpha
Helix 12
AB3
B
366 372Right-handed alpha
Helix 13
AB4
B
396 400Right-handed 310
Helix 14
AB5
B
422 448Right-handed alpha
Helix 15
AB6
B
448 470Right-handed alpha
Helix 16
AB7
B
472 481Right-handed alpha
Helix 17
AB8
B
497 505Right-handed alpha
Helix 18
AB9
B
519 526Right-handed alpha
Helix 19
AC1
B
526 533Right-handed alpha
Helix 20
AC2
B
546 555Right-handed alpha
Helix 21
AC3
B
565 573Right-handed alpha
Helix 22
AC4
B
584 588Right-handed 310
Helix 23
AC5
B
590 605Right-handed alpha
Helix 24
AC6
B
629 637Right-handed alpha
Helix 25
AC7
B
663 676Right-handed alpha
Helix 26
AC8
B
676 695Right-handed alpha
Helix 27
AC9
B
703 716Right-handed alpha
Helix 28
AD1
A
108 119Right-handed alpha
Helix 29
AD2
A
125 149Right-handed alpha
Helix 30
AD3
A
179 188Right-handed alpha
Helix 31
AD4
A
193 202Right-handed alpha
Helix 32
AD5
A
206 211Right-handed 310
Helix 33
AD6
A
218 221Right-handed 310
Helix 34
AD7
A
222 226Right-handed alpha
Helix 35
AD8
A
274 280Right-handed 310
Helix 36
AD9
A
281 294Right-handed alpha
Helix 37
AE1
A
312 316Right-handed 310
Helix 38
AE2
A
317 321Right-handed 310
Helix 39
AE3
A
322 335Right-handed alpha
Helix 40
AE4
A
396 400Right-handed 310
Helix 41
AE5
A
423 448Right-handed alpha
Helix 42
AE6
A
448 470Right-handed alpha
Helix 43
AE7
A
472 480Right-handed alpha
Helix 44
AE8
A
481 483Right-handed 310
Helix 45
AE9
A
497 504Right-handed alpha
Helix 46
AF1
A
519 525Right-handed alpha
Helix 47
AF2
A
526 533Right-handed alpha
Helix 48
AF3
A
546 555Right-handed alpha
Helix 49
AF4
A
592 605Right-handed alpha
Helix 50
AF5
A
629 635Right-handed alpha
Helix 51
AF6
A
665 673Right-handed alpha
Helix 52
AF7
A
676 695Right-handed alpha
Helix 53
AF8
A
701 703Right-handed 310
Helix 54
AF9
A
704 716Right-handed alpha
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There are 10 sheets in PDB entry 5TVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 104first strand
Strand 2
A
253 260anti-parallel
Strand 3
A
243 248anti-parallel
Strand 4
A
227 235anti-parallel
Strand 5
A
265 272anti-parallel
Strand 6
A
168 173anti-parallel
Strand 7
A
158 163anti-parallel
Strand 8
A
300 302parallel
Strand 9
A
305 306anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
A
189 190parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
300 302anti-parallel
Strand 3
B
158 163parallel
Strand 4
B
168 173anti-parallel
Strand 5
B
265 272anti-parallel
Strand 6
B
227 235anti-parallel
Strand 7
B
243 248anti-parallel
Strand 8
B
253 260anti-parallel
Strand 9
A
95 104anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
A
106 107parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 348first strand
Strand 2
B
354 361anti-parallel
Strand 3
B
403 407anti-parallel
Strand 4
B
378 382parallel
Strand 5
B
385 387anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 487first strand
Strand 2
B
539 542anti-parallel
Strand 3
B
511 516parallel
Strand 4
B
560 564parallel
Strand 5
B
556 557anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 614first strand
Strand 2
B
656 659parallel
Strand 3
B
623 626anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 348first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
403 407anti-parallel
Strand 4
A
379 382parallel
Strand 5
A
385 388anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 487first strand
Strand 2
A
540 542anti-parallel
Strand 3
A
512 516parallel
Strand 4
A
560 563parallel
Strand 5
A
556 557anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 612first strand
Strand 2
A
655 659parallel
Strand 3
A
623 627anti-parallel
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