Analysis of interatomic Contacts of Structural Units in PDB entry:
5TW7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TW7 entry

There are 3 chains in PDB entry 5TW7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	GLU 521
B	THR 2	GLU 521
C	MET 1	LYS 315

There are103 helices in PDB entry 5TW7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	26	Right-handed alpha
Helix 2	AA2	A	38	46	Right-handed alpha
Helix 3	AA3	A	67	73	Right-handed 310
Helix 4	AA4	A	81	91	Right-handed alpha
Helix 5	AA5	A	179	190	Right-handed alpha
Helix 6	AA6	A	199	216	Right-handed alpha
Helix 7	AA7	A	227	242	Right-handed alpha
Helix 8	AA8	A	258	272	Right-handed alpha
Helix 9	AA9	A	280	289	Right-handed alpha
Helix 10	AB1	A	293	316	Right-handed alpha
Helix 11	AB2	A	327	332	Right-handed alpha
Helix 12	AB3	A	370	382	Right-handed alpha
Helix 13	AB4	A	384	389	Right-handed alpha
Helix 14	AB5	A	396	401	Right-handed 310
Helix 15	AB6	A	407	428	Right-handed alpha
Helix 16	AB7	A	435	440	Right-handed alpha
Helix 17	AB8	A	485	500	Right-handed alpha
Helix 18	AB9	B	15	26	Right-handed alpha
Helix 19	AC1	B	38	46	Right-handed alpha
Helix 20	AC2	B	67	73	Right-handed 310
Helix 21	AC3	B	81	91	Right-handed alpha
Helix 22	AC4	B	179	190	Right-handed alpha
Helix 23	AC5	B	199	216	Right-handed alpha
Helix 24	AC6	B	227	242	Right-handed alpha
Helix 25	AC7	B	258	268	Right-handed alpha
Helix 26	AC8	B	280	289	Right-handed alpha
Helix 27	AC9	B	293	316	Right-handed alpha
Helix 28	AD1	B	327	332	Right-handed alpha
Helix 29	AD2	B	370	381	Right-handed alpha
Helix 30	AD3	B	384	389	Right-handed alpha
Helix 31	AD4	B	396	401	Right-handed 310
Helix 32	AD5	B	407	428	Right-handed alpha
Helix 33	AD6	B	435	440	Right-handed alpha
Helix 34	AD7	B	485	500	Right-handed alpha
Helix 35	AD8	C	15	26	Right-handed alpha
Helix 36	AD9	C	38	46	Right-handed alpha
Helix 37	AE1	C	67	73	Right-handed 310
Helix 38	AE2	C	81	91	Right-handed alpha
Helix 39	AE3	C	179	190	Right-handed alpha
Helix 40	AE4	C	199	216	Right-handed alpha
Helix 41	AE5	C	227	242	Right-handed alpha
Helix 42	AE6	C	258	268	Right-handed alpha
Helix 43	AE7	C	280	289	Right-handed alpha
Helix 44	AE8	C	293	316	Right-handed alpha
Helix 45	AE9	C	327	333	Right-handed alpha
Helix 46	AF1	C	370	381	Right-handed alpha
Helix 47	AF2	C	384	389	Right-handed alpha
Helix 48	AF3	C	396	401	Right-handed 310
Helix 49	AF4	C	407	428	Right-handed alpha
Helix 50	AF5	C	435	440	Right-handed alpha
Helix 51	AF6	C	485	500	Right-handed alpha
Helix 52	AF7	D	15	26	Right-handed alpha
Helix 53	AF8	D	38	46	Right-handed alpha
Helix 54	AF9	D	67	73	Right-handed 310
Helix 55	AG1	D	81	91	Right-handed alpha
Helix 56	AG2	D	179	190	Right-handed alpha
Helix 57	AG3	D	199	216	Right-handed alpha
Helix 58	AG4	D	227	242	Right-handed alpha
Helix 59	AG5	D	258	268	Right-handed alpha
Helix 60	AG6	D	280	289	Right-handed alpha
Helix 61	AG7	D	293	316	Right-handed alpha
Helix 62	AG8	D	327	332	Right-handed alpha
Helix 63	AG9	D	370	381	Right-handed alpha
Helix 64	AH1	D	384	389	Right-handed alpha
Helix 65	AH2	D	396	401	Right-handed 310
Helix 66	AH3	D	407	428	Right-handed alpha
Helix 67	AH4	D	435	440	Right-handed alpha
Helix 68	AH5	D	485	500	Right-handed alpha
Helix 69	AH6	E	15	26	Right-handed alpha
Helix 70	AH7	E	38	46	Right-handed alpha
Helix 71	AH8	E	67	73	Right-handed 310
Helix 72	AH9	E	81	91	Right-handed alpha
Helix 73	AI1	E	179	190	Right-handed alpha
Helix 74	AI2	E	199	216	Right-handed alpha
Helix 75	AI3	E	227	242	Right-handed alpha
Helix 76	AI4	E	258	268	Right-handed alpha
Helix 77	AI5	E	280	289	Right-handed alpha
Helix 78	AI6	E	293	316	Right-handed alpha
Helix 79	AI7	E	327	332	Right-handed alpha
Helix 80	AI8	E	370	381	Right-handed alpha
Helix 81	AI9	E	384	389	Right-handed alpha
Helix 82	AJ1	E	396	401	Right-handed 310
Helix 83	AJ2	E	407	428	Right-handed alpha
Helix 84	AJ3	E	435	440	Right-handed alpha
Helix 85	AJ4	E	485	500	Right-handed alpha
Helix 86	AJ5	F	15	26	Right-handed alpha
Helix 87	AJ6	F	38	46	Right-handed alpha
Helix 88	AJ7	F	58	62	Right-handed 310
Helix 89	AJ8	F	67	73	Right-handed 310
Helix 90	AJ9	F	81	91	Right-handed alpha
Helix 91	AK1	F	179	190	Right-handed alpha
Helix 92	AK2	F	199	216	Right-handed alpha
Helix 93	AK3	F	227	242	Right-handed alpha
Helix 94	AK4	F	258	268	Right-handed alpha
Helix 95	AK5	F	280	289	Right-handed alpha
Helix 96	AK6	F	293	316	Right-handed alpha
Helix 97	AK7	F	327	332	Right-handed alpha
Helix 98	AK8	F	370	382	Right-handed alpha
Helix 99	AK9	F	384	389	Right-handed alpha
Helix 100	AL1	F	396	401	Right-handed 310
Helix 101	AL2	F	407	428	Right-handed alpha
Helix 102	AL3	F	435	440	Right-handed alpha
Helix 103	AL4	F	485	500	Right-handed alpha

There are 24 sheets in PDB entry 5TW7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	5	10	parallel
Strand 3	A	49	52	parallel
Strand 4	A	77	80	parallel
Strand 5	A	165	168	parallel
Strand 6	A	153	160	anti-parallel
Strand 7	A	145	150	anti-parallel
Strand 8	A	103	110	anti-parallel
Strand 9	A	126	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	136	139	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	279	first strand
Strand 2	A	245	251	parallel
Strand 3	A	220	224	parallel
Strand 4	A	321	323	parallel
Strand 5	A	361	363	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	454	first strand
Strand 2	A	461	473	anti-parallel
Strand 3	A	503	509	parallel
Strand 4	D	503	509	anti-parallel
Strand 5	D	461	473	parallel
Strand 6	D	442	454	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	461	473	anti-parallel
Strand 3	A	503	509	parallel
Strand 4	D	503	509	anti-parallel
Strand 5	D	461	473	parallel
Strand 6	D	479	481	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	5	10	parallel
Strand 3	B	49	52	parallel
Strand 4	B	77	80	parallel
Strand 5	B	165	168	parallel
Strand 6	B	157	160	anti-parallel
Strand 7	B	145	149	anti-parallel
Strand 8	B	103	110	anti-parallel
Strand 9	B	126	132	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	136	139	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	279	first strand
Strand 2	B	245	251	parallel
Strand 3	B	219	224	parallel
Strand 4	B	319	323	parallel
Strand 5	B	361	363	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	454	first strand
Strand 2	B	461	473	anti-parallel
Strand 3	B	503	509	parallel
Strand 4	E	503	509	anti-parallel
Strand 5	E	461	473	parallel
Strand 6	E	442	454	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	461	473	anti-parallel
Strand 3	B	503	509	parallel
Strand 4	E	503	509	anti-parallel
Strand 5	E	461	473	parallel
Strand 6	E	479	481	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	34	first strand
Strand 2	C	5	10	parallel
Strand 3	C	49	52	parallel
Strand 4	C	77	80	parallel
Strand 5	C	165	168	parallel
Strand 6	C	153	160	anti-parallel
Strand 7	C	145	150	anti-parallel
Strand 8	C	103	110	anti-parallel
Strand 9	C	126	132	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	136	139	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	279	first strand
Strand 2	C	245	251	parallel
Strand 3	C	220	224	parallel
Strand 4	C	321	323	parallel
Strand 5	C	361	363	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	454	first strand
Strand 2	C	461	473	anti-parallel
Strand 3	C	503	509	parallel
Strand 4	F	503	509	anti-parallel
Strand 5	F	462	473	parallel
Strand 6	F	442	453	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	481	first strand
Strand 2	C	461	473	anti-parallel
Strand 3	C	503	509	parallel
Strand 4	F	503	509	anti-parallel
Strand 5	F	462	473	parallel
Strand 6	F	479	481	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	34	first strand
Strand 2	D	5	10	parallel
Strand 3	D	49	52	parallel
Strand 4	D	77	80	parallel
Strand 5	D	165	168	parallel
Strand 6	D	157	160	anti-parallel
Strand 7	D	145	149	anti-parallel
Strand 8	D	103	110	anti-parallel
Strand 9	D	126	132	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	136	139	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	279	first strand
Strand 2	D	245	251	parallel
Strand 3	D	220	224	parallel
Strand 4	D	321	323	parallel
Strand 5	D	361	363	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	34	first strand
Strand 2	E	5	10	parallel
Strand 3	E	49	52	parallel
Strand 4	E	77	80	parallel
Strand 5	E	165	168	parallel
Strand 6	E	153	160	anti-parallel
Strand 7	E	145	150	anti-parallel
Strand 8	E	103	110	anti-parallel
Strand 9	E	126	132	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	136	139	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	279	first strand
Strand 2	E	245	251	parallel
Strand 3	E	220	224	parallel
Strand 4	E	321	323	parallel
Strand 5	E	361	363	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	34	first strand
Strand 2	F	5	10	parallel
Strand 3	F	49	52	parallel
Strand 4	F	77	80	parallel
Strand 5	F	165	168	parallel
Strand 6	F	157	160	anti-parallel
Strand 7	F	145	149	anti-parallel
Strand 8	F	103	110	anti-parallel
Strand 9	F	126	132	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	136	139	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	274	279	first strand
Strand 2	F	245	251	parallel
Strand 3	F	219	224	parallel
Strand 4	F	319	323	parallel
Strand 5	F	361	363	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TW7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TW7