Analysis of interatomic Contacts of Structural Units in PDB entry:
5TWN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TWN entry

There are 2 chains in PDB entry 5TWN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1MET 573
B
 SER 1LEU 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 5TWN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 53Right-handed alpha
Helix 2
AA2
A
61 76Right-handed alpha
Helix 3
AA3
A
84 90Right-handed alpha
Helix 4
AA4
A
104 110Right-handed alpha
Helix 5
AA5
A
112 129Right-handed alpha
Helix 6
AA6
A
164 188Right-handed alpha
Helix 7
AA7
A
189 195Right-handed 310
Helix 8
AA8
A
196 211Right-handed alpha
Helix 9
AA9
A
223 228Right-handed alpha
Helix 10
AB1
A
229 241Right-handed alpha
Helix 11
AB2
A
246 260Right-handed alpha
Helix 12
AB3
A
286 306Right-handed alpha
Helix 13
AB4
A
328 346Right-handed alpha
Helix 14
AB5
A
388 401Right-handed alpha
Helix 15
AB6
A
406 415Right-handed alpha
Helix 16
AB7
A
418 424Right-handed alpha
Helix 17
AB8
A
424 436Right-handed alpha
Helix 18
AB9
A
455 457Right-handed 310
Helix 19
AC1
A
458 468Right-handed alpha
Helix 20
AC2
A
469 473Right-handed 310
Helix 21
AC3
A
478 493Right-handed alpha
Helix 22
AC4
A
496 513Right-handed alpha
Helix 23
AC5
A
515 526Right-handed alpha
Helix 24
AC6
A
527 530Right-handed 310
Helix 25
AC7
A
539 543Right-handed 310
Helix 26
AC8
B
44 53Right-handed alpha
Helix 27
AC9
B
61 76Right-handed alpha
Helix 28
AD1
B
84 90Right-handed alpha
Helix 29
AD2
B
104 110Right-handed alpha
Helix 30
AD3
B
112 129Right-handed alpha
Helix 31
AD4
B
164 188Right-handed alpha
Helix 32
AD5
B
189 195Right-handed 310
Helix 33
AD6
B
196 211Right-handed alpha
Helix 34
AD7
B
223 228Right-handed alpha
Helix 35
AD8
B
229 241Right-handed alpha
Helix 36
AD9
B
246 260Right-handed alpha
Helix 37
AE1
B
286 306Right-handed alpha
Helix 38
AE2
B
328 346Right-handed alpha
Helix 39
AE3
B
359 362Right-handed 310
Helix 40
AE4
B
388 401Right-handed alpha
Helix 41
AE5
B
407 415Right-handed alpha
Helix 42
AE6
B
418 424Right-handed alpha
Helix 43
AE7
B
424 436Right-handed alpha
Helix 44
AE8
B
455 457Right-handed 310
Helix 45
AE9
B
458 468Right-handed alpha
Helix 46
AF1
B
469 473Right-handed 310
Helix 47
AF2
B
478 493Right-handed alpha
Helix 48
AF3
B
496 513Right-handed alpha
Helix 49
AF4
B
515 526Right-handed alpha
Helix 50
AF5
B
539 543Right-handed 310
Helix 51
AF6
B
547 552Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 5TWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
136 140parallel
Strand 5
A
159 163anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
309 316anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
368 374anti-parallel
Strand 3
A
380 386anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 447first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
561 563parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
565 566anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
273 277anti-parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
136 141parallel
Strand 5
B
158 163anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
319 325anti-parallel
Strand 3
B
309 316anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 365first strand
Strand 2
B
368 374anti-parallel
Strand 3
B
380 385anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 446first strand
Strand 2
B
451 454anti-parallel
Strand 3
B
562 563parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il