Analysis of interatomic Contacts of Structural Units in PDB entry:
5TX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TX5 entry

There are 2 chains in PDB entry 5TX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 10GLU 294
B
 VAL 9GLU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5TX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 15Right-handed 310
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
A
99 105Right-handed alpha
Helix 4
AA4
A
111 132Right-handed alpha
Helix 5
AA5
A
140 142Right-handed 310
Helix 6
AA6
A
162 168Right-handed alpha
Helix 7
AA7
A
206 224Right-handed alpha
Helix 8
AA8
A
236 244Right-handed alpha
Helix 9
AA9
A
248 252Right-handed 310
Helix 10
AB1
A
257 268Right-handed alpha
Helix 11
AB2
A
277 293Right-handed alpha
Helix 12
AB3
B
13 17Right-handed 310
Helix 13
AB4
B
53 69Right-handed alpha
Helix 14
AB5
B
100 105Right-handed alpha
Helix 15
AB6
B
111 132Right-handed alpha
Helix 16
AB7
B
140 142Right-handed 310
Helix 17
AB8
B
162 169Right-handed alpha
Helix 18
AB9
B
189 193Right-handed 310
Helix 19
AC1
B
194 199Right-handed alpha
Helix 20
AC2
B
206 224Right-handed alpha
Helix 21
AC3
B
233 243Right-handed alpha
Helix 22
AC4
B
248 253Right-handed 310
Helix 23
AC5
B
257 268Right-handed alpha
Helix 24
AC6
B
271 275Right-handed 310
Helix 25
AC7
B
277 293Right-handed alpha
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There are 4 sheets in PDB entry 5TX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
78 83parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
40 49anti-parallel
Strand 5
A
31 36anti-parallel
Strand 6
A
17 23anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
152 154anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
40 48anti-parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
78 84anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
144 146anti-parallel
Strand 3
B
152 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il