Analysis of interatomic Contacts of Structural Units in PDB entry:
5TXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TXR entry

There are 2 chains in PDB entry 5TXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 68GLN 548
A
 GLY 70ASN 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 5TXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
72 87Right-handed alpha
Helix 2
AA2
B
125 128Right-handed 310
Helix 3
AA3
B
129 144Right-handed alpha
Helix 4
AA4
B
157 172Right-handed alpha
Helix 5
AA5
B
181 197Right-handed alpha
Helix 6
AA6
B
209 220Right-handed alpha
Helix 7
AA7
B
230 240Right-handed alpha
Helix 8
AA8
B
263 275Right-handed alpha
Helix 9
AA9
B
295 301Right-handed alpha
Helix 10
AB1
B
301 309Right-handed alpha
Helix 11
AB2
B
323 328Right-handed alpha
Helix 12
AB3
B
349 360Right-handed alpha
Helix 13
AB4
B
360 365Right-handed alpha
Helix 14
AB5
B
370 386Right-handed alpha
Helix 15
AB6
B
388 409Right-handed alpha
Helix 16
AB7
B
426 442Right-handed alpha
Helix 17
AB8
B
469 488Right-handed alpha
Helix 18
AB9
B
491 498Right-handed alpha
Helix 19
AC1
B
517 522Right-handed alpha
Helix 20
AC2
B
523 528Right-handed 310
Helix 21
AC3
B
529 533Right-handed 310
Helix 22
AC4
B
540 544Right-handed 310
Helix 23
AC5
A
72 87Right-handed alpha
Helix 24
AC6
A
125 128Right-handed 310
Helix 25
AC7
A
129 144Right-handed alpha
Helix 26
AC8
A
157 171Right-handed alpha
Helix 27
AC9
A
181 197Right-handed alpha
Helix 28
AD1
A
209 220Right-handed alpha
Helix 29
AD2
A
230 240Right-handed alpha
Helix 30
AD3
A
263 275Right-handed alpha
Helix 31
AD4
A
295 301Right-handed alpha
Helix 32
AD5
A
301 309Right-handed alpha
Helix 33
AD6
A
323 328Right-handed alpha
Helix 34
AD7
A
349 360Right-handed alpha
Helix 35
AD8
A
360 365Right-handed alpha
Helix 36
AD9
A
370 386Right-handed alpha
Helix 37
AE1
A
387 409Right-handed alpha
Helix 38
AE2
A
426 442Right-handed alpha
Helix 39
AE3
A
469 488Right-handed alpha
Helix 40
AE4
A
491 498Right-handed alpha
Helix 41
AE5
A
517 522Right-handed alpha
Helix 42
AE6
A
523 528Right-handed 310
Helix 43
AE7
A
529 533Right-handed 310
Helix 44
AE8
A
540 544Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 5TXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
105 107anti-parallel
Strand 3
B
114 117anti-parallel
Strand 4
B
443 444parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 179first strand
Strand 2
B
344 348anti-parallel
Strand 3
B
330 334anti-parallel
Strand 4
B
276 281parallel
Strand 5
B
247 252parallel
Strand 6
B
201 205parallel
Strand 7
B
222 226parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
260 261anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 423first strand
Strand 2
B
459 462anti-parallel
Strand 3
B
447 448anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
105 107anti-parallel
Strand 3
A
114 117anti-parallel
Strand 4
A
443 444parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
330 334anti-parallel
Strand 4
A
276 281parallel
Strand 5
A
247 252parallel
Strand 6
A
201 205parallel
Strand 7
A
222 226parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
A
459 462anti-parallel
Strand 3
A
447 448anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il