Analysis of interatomic Contacts of Structural Units in PDB entry:
5TY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TY0 entry

There is 1 chain in PDB entry 5TY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5TY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 6Right-handed 310
Helix 2
AA2
A
20 36Right-handed alpha
Helix 3
AA3
A
93 104Right-handed alpha
Helix 4
AA4
A
118 131Right-handed alpha
Helix 5
AA5
A
148 159Right-handed alpha
Helix 6
AA6
A
173 177Right-handed 310
Helix 7
AA7
A
206 208Right-handed 310
Helix 8
AA8
A
209 225Right-handed alpha
Helix 9
AA9
A
228 238Right-handed alpha
Helix 10
AB1
A
242 256Right-handed alpha
Helix 11
AB2
A
272 284Right-handed alpha
Helix 12
AB3
A
286 290Right-handed 310
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There are 5 sheets in PDB entry 5TY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
8 15parallel
Strand 4
A
106 112parallel
Strand 5
A
135 140parallel
Strand 6
A
260 264parallel
Strand 7
A
164 166parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
179 182anti-parallel
Strand 3
A
187 191anti-parallel
Strand 4
A
200 203anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
302 305anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
344 347anti-parallel
Strand 3
A
392 394anti-parallel
Strand 4
A
314 323anti-parallel
Strand 5
A
327 336anti-parallel
Strand 6
A
378 382anti-parallel
Strand 7
A
359 362anti-parallel
Strand 8
A
367 370anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
372 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il