Analysis of interatomic Contacts of Structural Units in PDB entry:
5TY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TY2 entry

There are 2 chains in PDB entry 5TY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 25	GLN 383
B	THR 25	GLN 383

There are 30 helices in PDB entry 5TY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	38	Right-handed alpha
Helix 2	AA2	A	44	48	Right-handed 310
Helix 3	AA3	A	73	75	Right-handed 310
Helix 4	AA4	A	76	91	Right-handed alpha
Helix 5	AA5	A	103	111	Right-handed alpha
Helix 6	AA6	A	128	138	Right-handed alpha
Helix 7	AA7	A	141	152	Right-handed alpha
Helix 8	AA8	A	154	170	Right-handed alpha
Helix 9	AA9	A	183	188	Right-handed alpha
Helix 10	AB1	A	189	191	Right-handed 310
Helix 11	AB2	A	192	196	Right-handed 310
Helix 12	AB3	A	205	219	Right-handed alpha
Helix 13	AB4	A	221	227	Right-handed alpha
Helix 14	AB5	A	296	314	Right-handed alpha
Helix 15	AB6	A	348	352	Right-handed 310
Helix 16	AB7	B	30	38	Right-handed alpha
Helix 17	AB8	B	44	48	Right-handed 310
Helix 18	AB9	B	73	75	Right-handed 310
Helix 19	AC1	B	76	91	Right-handed alpha
Helix 20	AC2	B	103	111	Right-handed alpha
Helix 21	AC3	B	128	138	Right-handed alpha
Helix 22	AC4	B	141	152	Right-handed alpha
Helix 23	AC5	B	154	170	Right-handed alpha
Helix 24	AC6	B	183	188	Right-handed alpha
Helix 25	AC7	B	189	191	Right-handed 310
Helix 26	AC8	B	192	196	Right-handed 310
Helix 27	AC9	B	204	219	Right-handed alpha
Helix 28	AD1	B	221	227	Right-handed alpha
Helix 29	AD2	B	296	314	Right-handed alpha
Helix 30	AD3	B	348	352	Right-handed 310

There are 11 sheets in PDB entry 5TY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	279	288	anti-parallel
Strand 4	A	267	276	anti-parallel
Strand 5	A	255	263	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	203	204	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	125	127	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	236	237	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	321	first strand
Strand 2	A	339	344	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	379	382	anti-parallel
Strand 4	A	360	364	anti-parallel
Strand 5	A	353	357	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	65	first strand
Strand 2	B	51	56	anti-parallel
Strand 3	B	279	288	anti-parallel
Strand 4	B	267	276	anti-parallel
Strand 5	B	255	263	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	125	127	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	236	237	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	321	first strand
Strand 2	B	339	344	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	331	335	anti-parallel
Strand 3	B	379	382	anti-parallel
Strand 4	B	360	364	anti-parallel
Strand 5	B	353	357	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TY2