Analysis of interatomic Contacts of Structural Units in PDB entry:
5TY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TY5 entry

There are 6 chains in PDB entry 5TY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLY 175
B
 MET 1GLY 175
C
 MET 1PHE 174
D
 ASN 2GLY 175
E
 MET 1PHE 174
F
 ASN 2PHE 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5TY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
113 117Right-handed 310
Helix 3
AA3
A
121 125Right-handed 310
Helix 4
AA4
A
126 140Right-handed alpha
Helix 5
AA5
A
155 174Right-handed alpha
Helix 6
AA6
B
2 7Right-handed alpha
Helix 7
AA7
B
113 117Right-handed 310
Helix 8
AA8
B
121 125Right-handed 310
Helix 9
AA9
B
126 140Right-handed alpha
Helix 10
AB1
B
155 175Right-handed alpha
Helix 11
AB2
C
2 7Right-handed alpha
Helix 12
AB3
C
113 117Right-handed 310
Helix 13
AB4
C
121 125Right-handed 310
Helix 14
AB5
C
126 140Right-handed alpha
Helix 15
AB6
C
141 145Right-handed 310
Helix 16
AB7
C
155 174Right-handed alpha
Helix 17
AB8
D
3 7Right-handed alpha
Helix 18
AB9
D
113 117Right-handed 310
Helix 19
AC1
D
121 125Right-handed 310
Helix 20
AC2
D
126 140Right-handed alpha
Helix 21
AC3
D
156 175Right-handed alpha
Helix 22
AC4
E
2 7Right-handed alpha
Helix 23
AC5
E
113 117Right-handed 310
Helix 24
AC6
E
121 125Right-handed 310
Helix 25
AC7
E
126 140Right-handed alpha
Helix 26
AC8
E
141 145Right-handed 310
Helix 27
AC9
E
155 174Right-handed alpha
Helix 28
AD1
F
3 7Right-handed alpha
Helix 29
AD2
F
113 117Right-handed 310
Helix 30
AD3
F
121 125Right-handed 310
Helix 31
AD4
F
126 140Right-handed alpha
Helix 32
AD5
F
156 174Right-handed alpha
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There are 12 sheets in PDB entry 5TY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
148 154first strand
Strand 3
A
17 23first strand
Strand 4
A
55 58anti-parallel
Strand 5
A
71 74anti-parallel
Strand 6
A
105 110parallel
Strand 7
A
85 98anti-parallel
Strand 8
A
148 154anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
40 45anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
148 154first strand
Strand 3
B
17 23first strand
Strand 4
B
55 58anti-parallel
Strand 5
B
71 74anti-parallel
Strand 6
B
105 110parallel
Strand 7
B
84 98anti-parallel
Strand 8
B
148 154anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
40 45anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 102first strand
Strand 2
C
148 154first strand
Strand 3
C
17 23first strand
Strand 4
C
55 58anti-parallel
Strand 5
C
71 74anti-parallel
Strand 6
C
105 110parallel
Strand 7
C
85 98anti-parallel
Strand 8
C
148 154anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 33first strand
Strand 2
C
40 45anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 102first strand
Strand 2
D
148 155first strand
Strand 3
D
17 23first strand
Strand 4
D
55 58anti-parallel
Strand 5
D
71 74anti-parallel
Strand 6
D
105 110parallel
Strand 7
D
85 98anti-parallel
Strand 8
D
148 155anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 33first strand
Strand 2
D
40 45anti-parallel
Strand 3
F
84 98parallel
Strand 4
F
101 102anti-parallel
Strand 5
F
84 98anti-parallel
Strand 6
F
17 23anti-parallel
Strand 7
F
55 58anti-parallel
Strand 8
F
71 74anti-parallel
Strand 9
F
105 110parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
101 102first strand
Strand 2
F
84 98anti-parallel
Strand 3
F
148 155anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 102first strand
Strand 2
E
148 154first strand
Strand 3
E
17 23first strand
Strand 4
E
55 58anti-parallel
Strand 5
E
71 74anti-parallel
Strand 6
E
105 110parallel
Strand 7
E
85 98anti-parallel
Strand 8
E
148 154anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 33first strand
Strand 2
E
40 45anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
29 33first strand
Strand 2
F
40 45anti-parallel
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