Analysis of interatomic Contacts of Structural Units in PDB entry:
5TZ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TZ8 entry

There are 3 chains in PDB entry 5TZ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 571
C	MET 1	LEU 571
B	MET 1	LEU 117

There are 61 helices in PDB entry 5TZ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	25	Right-handed alpha
Helix 2	AA2	A	29	31	Right-handed 310
Helix 3	AA3	A	45	52	Right-handed alpha
Helix 4	AA4	A	71	82	Right-handed alpha
Helix 5	AA5	A	99	112	Right-handed alpha
Helix 6	AA6	A	146	150	Right-handed 310
Helix 7	AA7	A	159	165	Right-handed alpha
Helix 8	AA8	A	176	189	Right-handed alpha
Helix 9	AA9	A	218	234	Right-handed alpha
Helix 10	AB1	A	238	257	Right-handed alpha
Helix 11	AB2	A	261	266	Right-handed alpha
Helix 12	AB3	A	267	269	Right-handed 310
Helix 13	AB4	A	270	284	Right-handed alpha
Helix 14	AB5	A	285	293	Right-handed 310
Helix 15	AB6	A	294	296	Right-handed 310
Helix 16	AB7	A	297	306	Right-handed alpha
Helix 17	AB8	A	308	322	Right-handed alpha
Helix 18	AB9	A	416	420	Right-handed alpha
Helix 19	AC1	A	422	426	Right-handed 310
Helix 20	AC2	A	491	495	Right-handed alpha
Helix 21	AC3	A	552	557	Right-handed alpha
Helix 22	AC4	C	15	25	Right-handed alpha
Helix 23	AC5	C	29	31	Right-handed 310
Helix 24	AC6	C	45	52	Right-handed alpha
Helix 25	AC7	C	71	82	Right-handed alpha
Helix 26	AC8	C	99	112	Right-handed alpha
Helix 27	AC9	C	146	150	Right-handed 310
Helix 28	AD1	C	159	164	Right-handed alpha
Helix 29	AD2	C	176	188	Right-handed alpha
Helix 30	AD3	C	218	234	Right-handed alpha
Helix 31	AD4	C	238	257	Right-handed alpha
Helix 32	AD5	C	261	265	Right-handed 310
Helix 33	AD6	C	270	285	Right-handed alpha
Helix 34	AD7	C	286	292	Right-handed 310
Helix 35	AD8	C	294	296	Right-handed 310
Helix 36	AD9	C	297	306	Right-handed alpha
Helix 37	AE1	C	308	322	Right-handed alpha
Helix 38	AE2	C	416	420	Right-handed alpha
Helix 39	AE3	C	422	426	Right-handed 310
Helix 40	AE4	C	491	495	Right-handed alpha
Helix 41	AE5	C	552	557	Right-handed alpha
Helix 42	AE6	B	16	25	Right-handed alpha
Helix 43	AE7	B	29	31	Right-handed 310
Helix 44	AE8	B	46	51	Right-handed alpha
Helix 45	AE9	B	52	54	Right-handed 310
Helix 46	AF1	B	71	82	Right-handed alpha
Helix 47	AF2	B	99	112	Right-handed alpha
Helix 48	AF3	B	146	150	Right-handed 310
Helix 49	AF4	B	159	165	Right-handed alpha
Helix 50	AF5	B	177	189	Right-handed alpha
Helix 51	AF6	B	218	234	Right-handed alpha
Helix 52	AF7	B	238	257	Right-handed alpha
Helix 53	AF8	B	261	266	Right-handed alpha
Helix 54	AF9	B	270	284	Right-handed alpha
Helix 55	AG1	B	286	292	Right-handed 310
Helix 56	AG2	B	297	306	Right-handed alpha
Helix 57	AG3	B	308	321	Right-handed alpha
Helix 58	AG4	B	416	420	Right-handed alpha
Helix 59	AG5	B	422	426	Right-handed 310
Helix 60	AG6	B	491	495	Right-handed alpha
Helix 61	AG7	B	552	557	Right-handed alpha

There are 21 sheets in PDB entry 5TZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	33	39	parallel
Strand 3	A	3	9	parallel
Strand 4	A	86	89	parallel
Strand 5	A	156	158	anti-parallel
Strand 6	A	115	118	anti-parallel
Strand 7	A	192	195	parallel
Strand 8	A	137	140	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	201	203	anti-parallel
Strand 3	A	120	122	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	330	first strand
Strand 2	A	333	337	anti-parallel
Strand 3	A	345	348	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	362	first strand
Strand 2	A	366	375	anti-parallel
Strand 3	A	409	415	anti-parallel
Strand 4	A	404	406	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	400	first strand
Strand 2	A	384	391	anti-parallel
Strand 3	A	428	437	anti-parallel
Strand 4	A	440	445	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	400	first strand
Strand 2	A	384	391	anti-parallel
Strand 3	A	428	437	anti-parallel
Strand 4	A	483	490	anti-parallel
Strand 5	A	468	476	anti-parallel
Strand 6	A	461	465	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	501	first strand
Strand 2	A	505	510	anti-parallel
Strand 3	A	542	547	anti-parallel
Strand 4	A	530	539	anti-parallel
Strand 5	A	520	525	anti-parallel
Strand 6	A	561	563	anti-parallel
Strand 7	A	568	570	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	33	39	parallel
Strand 3	C	3	9	parallel
Strand 4	C	86	89	parallel
Strand 5	C	156	158	anti-parallel
Strand 6	C	115	118	anti-parallel
Strand 7	C	192	195	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	201	203	anti-parallel
Strand 3	C	120	122	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	330	first strand
Strand 2	C	333	337	anti-parallel
Strand 3	C	345	348	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	362	first strand
Strand 2	C	366	375	anti-parallel
Strand 3	C	409	415	anti-parallel
Strand 4	C	404	406	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	384	391	anti-parallel
Strand 3	C	428	437	anti-parallel
Strand 4	C	440	443	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	384	391	anti-parallel
Strand 3	C	428	437	anti-parallel
Strand 4	C	483	489	anti-parallel
Strand 5	C	468	476	anti-parallel
Strand 6	C	462	465	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	501	first strand
Strand 2	C	505	510	anti-parallel
Strand 3	C	542	547	anti-parallel
Strand 4	C	530	536	anti-parallel
Strand 5	C	520	525	anti-parallel
Strand 6	C	561	562	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	33	39	parallel
Strand 3	B	3	9	parallel
Strand 4	B	86	89	parallel
Strand 5	B	156	158	anti-parallel
Strand 6	B	115	118	anti-parallel
Strand 7	B	192	195	parallel
Strand 8	B	137	140	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	201	203	anti-parallel
Strand 3	B	120	122	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	334	337	anti-parallel
Strand 3	B	345	348	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	362	first strand
Strand 2	B	366	373	anti-parallel
Strand 3	B	409	415	anti-parallel
Strand 4	B	404	406	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	384	391	anti-parallel
Strand 3	B	428	437	anti-parallel
Strand 4	B	440	445	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	384	391	anti-parallel
Strand 3	B	428	437	anti-parallel
Strand 4	B	483	489	anti-parallel
Strand 5	B	468	476	anti-parallel
Strand 6	B	461	465	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	501	first strand
Strand 2	B	505	510	anti-parallel
Strand 3	B	542	547	anti-parallel
Strand 4	B	530	536	anti-parallel
Strand 5	B	520	525	anti-parallel
Strand 6	B	561	563	anti-parallel
Strand 7	B	568	570	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TZ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TZ8