Analysis of interatomic Contacts of Structural Units in PDB entry:
5TZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TZI entry

There is 1 chain in PDB entry 5TZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1ASP 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5TZI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
15 25Right-handed alpha
Helix 2
AA2
C
45 52Right-handed alpha
Helix 3
AA3
C
71 82Right-handed alpha
Helix 4
AA4
C
99 111Right-handed alpha
Helix 5
AA5
C
146 150Right-handed 310
Helix 6
AA6
C
159 165Right-handed alpha
Helix 7
AA7
C
176 189Right-handed alpha
Helix 8
AA8
C
218 234Right-handed alpha
Helix 9
AA9
C
238 257Right-handed alpha
Helix 10
AB1
C
261 266Right-handed alpha
Helix 11
AB2
C
267 269Right-handed 310
Helix 12
AB3
C
270 283Right-handed alpha
Helix 13
AB4
C
284 285Right-handed 310
Helix 14
AB5
C
286 293Right-handed 310
Helix 15
AB6
C
294 296Right-handed 310
Helix 16
AB7
C
297 306Right-handed alpha
Helix 17
AB8
C
308 322Right-handed alpha
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There are 3 sheets in PDB entry 5TZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
33 39parallel
Strand 3
C
3 9parallel
Strand 4
C
86 89parallel
Strand 5
C
156 158anti-parallel
Strand 6
C
115 118anti-parallel
Strand 7
C
192 195parallel
Strand 8
C
137 140anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 96first strand
Strand 2
C
201 203anti-parallel
Strand 3
C
120 122parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
326 330first strand
Strand 2
C
333 337anti-parallel
Strand 3
C
345 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il