Analysis of interatomic Contacts of Structural Units in PDB entry:
5U01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U01 entry

There are 6 chains in PDB entry 5U01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 19	ASP 291
B	PRO 19	ASP 291
C	PRO 19	ASP 291
D	PRO 19	ASP 291
F	T 200	T 226
E	T 200	T 226

There are 17 helices in PDB entry 5U01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	136	Right-handed alpha
Helix 2	AA2	A	144	149	Right-handed alpha
Helix 3	AA3	A	240	242	Right-handed 310
Helix 4	AA4	B	122	124	Right-handed 310
Helix 5	AA5	B	125	136	Right-handed alpha
Helix 6	AA6	B	144	148	Right-handed 310
Helix 7	AA7	B	188	192	Right-handed 310
Helix 8	AA8	B	240	242	Right-handed 310
Helix 9	AA9	C	125	136	Right-handed alpha
Helix 10	AB1	C	144	149	Right-handed alpha
Helix 11	AB2	C	240	242	Right-handed 310
Helix 12	AB3	D	36	43	Right-handed 310
Helix 13	AB4	D	122	124	Right-handed 310
Helix 14	AB5	D	125	136	Right-handed alpha
Helix 15	AB6	D	144	148	Right-handed 310
Helix 16	AB7	D	188	192	Right-handed 310
Helix 17	AB8	D	240	242	Right-handed 310

There are 28 sheets in PDB entry 5U01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	25	first strand
Strand 2	A	60	64	anti-parallel
Strand 3	A	110	112	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	116	120	parallel
Strand 3	A	89	92	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	99	104	anti-parallel
Strand 3	A	70	77	anti-parallel
Strand 4	A	156	166	anti-parallel
Strand 5	A	178	179	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	156	166	anti-parallel
Strand 3	A	183	184	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	249	253	anti-parallel
Strand 4	A	244	245	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	284	289	parallel
Strand 3	A	266	274	anti-parallel
Strand 4	A	225	230	anti-parallel
Strand 5	A	233	236	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	284	289	parallel
Strand 3	A	266	274	anti-parallel
Strand 4	A	279	280	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	25	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	110	112	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	99	103	anti-parallel
Strand 3	B	71	77	anti-parallel
Strand 4	B	156	166	anti-parallel
Strand 5	B	178	179	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	156	166	anti-parallel
Strand 3	B	183	184	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	117	119	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	211	216	anti-parallel
Strand 3	B	249	253	anti-parallel
Strand 4	B	244	245	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	284	289	parallel
Strand 3	B	266	274	anti-parallel
Strand 4	B	225	230	anti-parallel
Strand 5	B	233	236	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	284	289	parallel
Strand 3	B	266	274	anti-parallel
Strand 4	B	279	280	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	60	64	anti-parallel
Strand 3	C	110	112	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	116	120	parallel
Strand 3	C	89	92	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	70	77	anti-parallel
Strand 4	C	156	166	anti-parallel
Strand 5	C	178	179	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	156	166	anti-parallel
Strand 3	C	183	184	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	249	253	anti-parallel
Strand 4	C	244	245	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	284	289	parallel
Strand 3	C	266	274	anti-parallel
Strand 4	C	225	230	anti-parallel
Strand 5	C	233	236	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	284	289	parallel
Strand 3	C	266	274	anti-parallel
Strand 4	C	279	280	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	25	first strand
Strand 2	D	60	64	anti-parallel
Strand 3	D	110	112	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	99	103	anti-parallel
Strand 3	D	71	77	anti-parallel
Strand 4	D	156	166	anti-parallel
Strand 5	D	178	179	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	174	first strand
Strand 2	D	156	166	anti-parallel
Strand 3	D	183	184	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	117	119	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	199	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	249	253	anti-parallel
Strand 4	D	244	245	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	284	289	parallel
Strand 3	D	266	274	anti-parallel
Strand 4	D	225	230	anti-parallel
Strand 5	D	233	236	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	284	289	parallel
Strand 3	D	266	274	anti-parallel
Strand 4	D	279	280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U01

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U01