Analysis of interatomic Contacts of Structural Units in PDB entry:
5U02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U02 entry

There is 1 chain in PDB entry 5U02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 217LEU 571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5U02. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
217 234Right-handed alpha
Helix 2
AA2
A
238 257Right-handed alpha
Helix 3
AA3
A
261 266Right-handed alpha
Helix 4
AA4
A
271 285Right-handed alpha
Helix 5
AA5
A
286 292Right-handed 310
Helix 6
AA6
A
294 296Right-handed 310
Helix 7
AA7
A
297 306Right-handed alpha
Helix 8
AA8
A
308 322Right-handed alpha
Helix 9
AA9
A
416 420Right-handed alpha
Helix 10
AB1
A
422 426Right-handed 310
Helix 11
AB2
A
491 495Right-handed alpha
Helix 12
AB3
A
552 557Right-handed alpha
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There are 5 sheets in PDB entry 5U02. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 330first strand
Strand 2
A
333 337anti-parallel
Strand 3
A
345 348anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 362first strand
Strand 2
A
366 375anti-parallel
Strand 3
A
409 415anti-parallel
Strand 4
A
404 406anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 401first strand
Strand 2
A
384 391anti-parallel
Strand 3
A
428 437anti-parallel
Strand 4
A
440 445anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 401first strand
Strand 2
A
384 391anti-parallel
Strand 3
A
428 437anti-parallel
Strand 4
A
483 490anti-parallel
Strand 5
A
468 476anti-parallel
Strand 6
A
461 465anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 501first strand
Strand 2
A
505 510anti-parallel
Strand 3
A
542 547anti-parallel
Strand 4
A
529 539anti-parallel
Strand 5
A
520 526anti-parallel
Strand 6
A
561 563anti-parallel
Strand 7
A
568 570anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il